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FAR2 (fatty acyl CoA reductase 2)

Identity

Alias_namesMLSTD1
male sterility domain containing 1
Alias_symbol (synonym)FLJ10462
SDR10E2
Other alias
HGNC (Hugo) FAR2
LocusID (NCBI) 55711
Atlas_Id 63295
Location 12p11.22  [Link to chromosome band 12p11]
Location_base_pair Starts at 29301936 and ends at 29488549 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AMN1 (12p11.21) / FAR2 (12p11.22)CCDC91 (12p11.22) / FAR2 (12p11.22)FAR2 (12p11.22) / MKX (10p12.1)
SMAP1 (6q13) / FAR2 (12p11.22)CCDC91 FAR2AMN1 FAR2
SMAP1 FAR2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAR2   25531
Cards
Entrez_Gene (NCBI)FAR2  55711  fatty acyl CoA reductase 2
AliasesMLSTD1; SDR10E2
GeneCards (Weizmann)FAR2
Ensembl hg19 (Hinxton)ENSG00000064763 [Gene_View]  chr12:29301936-29488549 [Contig_View]  FAR2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000064763 [Gene_View]  chr12:29301936-29488549 [Contig_View]  FAR2 [Vega]
ICGC DataPortalENSG00000064763
TCGA cBioPortalFAR2
AceView (NCBI)FAR2
Genatlas (Paris)FAR2
WikiGenes55711
SOURCE (Princeton)FAR2
Genetics Home Reference (NIH)FAR2
Genomic and cartography
GoldenPath hg19 (UCSC)FAR2  -     chr12:29301936-29488549 +  12p11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAR2  -     12p11.22   [Description]    (hg38-Dec_2013)
EnsemblFAR2 - 12p11.22 [CytoView hg19]  FAR2 - 12p11.22 [CytoView hg38]
Mapping of homologs : NCBIFAR2 [Mapview hg19]  FAR2 [Mapview hg38]
OMIM616156   
Gene and transcription
Genbank (Entrez)AK001324 AK001927 AK027756 AK129857 AK314670
RefSeq transcript (Entrez)NM_001271783 NM_001271784 NM_018099
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)FAR2
Cluster EST : UnigeneHs.744741 [ NCBI ]
CGAP (NCI)Hs.744741
Alternative Splicing GalleryENSG00000064763
Gene ExpressionFAR2 [ NCBI-GEO ]   FAR2 [ EBI - ARRAY_EXPRESS ]   FAR2 [ SEEK ]   FAR2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55711
GTEX Portal (Tissue expression)FAR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K12
Splice isoforms : SwissVarQ96K12
Catalytic activity : Enzyme1.2.1.n2 [ Enzyme-Expasy ]   1.2.1.n21.2.1.n2 [ IntEnz-EBI ]   1.2.1.n2 [ BRENDA ]   1.2.1.n2 [ KEGG ]   
PhosPhoSitePlusQ96K12
Domains : Interpro (EBI)FAR    Male_sterile_NAD-bd    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)NAD_binding_4 (PF07993)    Sterile (PF03015)   
Domain families : Pfam (NCBI)pfam07993    pfam03015   
Conserved Domain (NCBI)FAR2
DMDM Disease mutations55711
Blocks (Seattle)FAR2
SuperfamilyQ96K12
Human Protein AtlasENSG00000064763
Peptide AtlasQ96K12
HPRD14723
IPIIPI00789529   IPI01021605   IPI01021738   IPI01023063   IPI01020823   IPI01020957   
Protein Interaction databases
DIP (DOE-UCLA)Q96K12
IntAct (EBI)Q96K12
FunCoupENSG00000064763
BioGRIDFAR2
STRING (EMBL)FAR2
ZODIACFAR2
Ontologies - Pathways
QuickGOQ96K12
Ontology : AmiGOperoxisome  peroxisome  peroxisomal membrane  peroxisomal matrix  endoplasmic reticulum membrane  ether lipid biosynthetic process  wax biosynthetic process  integral component of membrane  long-chain fatty-acyl-CoA metabolic process  cellular lipid metabolic process  small molecule metabolic process  long-chain-fatty-acyl-CoA reductase activity  oxidation-reduction process  fatty-acyl-CoA reductase (alcohol-forming) activity  
Ontology : EGO-EBIperoxisome  peroxisome  peroxisomal membrane  peroxisomal matrix  endoplasmic reticulum membrane  ether lipid biosynthetic process  wax biosynthetic process  integral component of membrane  long-chain fatty-acyl-CoA metabolic process  cellular lipid metabolic process  small molecule metabolic process  long-chain-fatty-acyl-CoA reductase activity  oxidation-reduction process  fatty-acyl-CoA reductase (alcohol-forming) activity  
Pathways : KEGGPeroxisome   
NDEx NetworkFAR2
Atlas of Cancer Signalling NetworkFAR2
Wikipedia pathwaysFAR2
Orthology - Evolution
OrthoDB55711
GeneTree (enSembl)ENSG00000064763
Phylogenetic Trees/Animal Genes : TreeFamFAR2
HOVERGENQ96K12
HOGENOMQ96K12
Homologs : HomoloGeneFAR2
Homology/Alignments : Family Browser (UCSC)FAR2
Gene fusions - Rearrangements
Fusion: TCGACCDC91 FAR2
Fusion: TCGAAMN1 FAR2
Fusion: TCGASMAP1 FAR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAR2
dbVarFAR2
ClinVarFAR2
1000_GenomesFAR2 
Exome Variant ServerFAR2
ExAC (Exome Aggregation Consortium)FAR2 (select the gene name)
Genetic variants : HAPMAP55711
Genomic Variants (DGV)FAR2 [DGVbeta]
DECIPHER (Syndromes)12:29301936-29488549  ENSG00000064763
CONAN: Copy Number AnalysisFAR2 
Mutations
ICGC Data PortalFAR2 
TCGA Data PortalFAR2 
Broad Tumor PortalFAR2
OASIS PortalFAR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAR2
DgiDB (Drug Gene Interaction Database)FAR2
DoCM (Curated mutations)FAR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAR2 (select a term)
intoGenFAR2
Cancer3DFAR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616156   
Orphanet
MedgenFAR2
Genetic Testing Registry FAR2
NextProtQ96K12 [Medical]
TSGene55711
GENETestsFAR2
Huge Navigator FAR2 [HugePedia]
snp3D : Map Gene to Disease55711
BioCentury BCIQFAR2
ClinGenFAR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55711
Chemical/Pharm GKB GenePA162388036
Clinical trialFAR2
Miscellaneous
canSAR (ICR)FAR2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAR2
EVEXFAR2
GoPubMedFAR2
iHOPFAR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:31 CET 2017

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