Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAR2P1 (fatty acyl-CoA reductase 2 pseudogene 1)

Identity

Alias_symbol (synonym)LOC440905
Other aliasHEL-182
HGNC (Hugo) FAR2P1
LocusID (NCBI) 440905
Atlas_Id 63296
Location 2q21.1  [Link to chromosome band 2q21]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAR2P1   49284
Cards
Entrez_Gene (NCBI)FAR2P1  440905  fatty acyl-CoA reductase 2 pseudogene 1
AliasesHEL-182
GeneCards (Weizmann)FAR2P1
Ensembl hg19 (Hinxton)ENSG00000180178 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180178 [Gene_View]  - [Contig_View]  FAR2P1 [Vega]
ICGC DataPortalENSG00000180178
TCGA cBioPortalFAR2P1
AceView (NCBI)FAR2P1
Genatlas (Paris)FAR2P1
WikiGenes440905
SOURCE (Princeton)FAR2P1
Genetics Home Reference (NIH)FAR2P1
Genomic and cartography
GoldenPath hg38 (UCSC)FAR2P1  -  
GoldenPath hg19 (UCSC)FAR2P1  -  
EnsemblFAR2P1 - [CytoView hg19]  FAR2P1 - [CytoView hg38]
Mapping of homologs : NCBIFAR2P1 [Mapview hg19]  FAR2P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI697170 AK095330 AK125921 AL043002 BC132694
RefSeq transcript (Entrez)NM_001013711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAR2P1
Cluster EST : UnigeneHs.469918 [ NCBI ]
CGAP (NCI)Hs.469918
Alternative Splicing GalleryENSG00000180178
Gene ExpressionFAR2P1 [ NCBI-GEO ]   FAR2P1 [ EBI - ARRAY_EXPRESS ]   FAR2P1 [ SEEK ]   FAR2P1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAR2P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440905
GTEX Portal (Tissue expression)FAR2P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZU82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZU82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZU82
Splice isoforms : SwissVarQ6ZU82
PhosPhoSitePlusQ6ZU82
Domains : Interpro (EBI)FAR   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAR2P1
DMDM Disease mutations440905
Blocks (Seattle)FAR2P1
SuperfamilyQ6ZU82
Human Protein AtlasENSG00000180178
Peptide AtlasQ6ZU82
HPRD18454
IPIIPI00741982   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZU82
IntAct (EBI)Q6ZU82
FunCoupENSG00000180178
BioGRIDFAR2P1
STRING (EMBL)FAR2P1
ZODIACFAR2P1
Ontologies - Pathways
QuickGOQ6ZU82
Ontology : AmiGOoxidation-reduction process  fatty-acyl-CoA reductase (alcohol-forming) activity  
Ontology : EGO-EBIoxidation-reduction process  fatty-acyl-CoA reductase (alcohol-forming) activity  
NDEx NetworkFAR2P1
Atlas of Cancer Signalling NetworkFAR2P1
Wikipedia pathwaysFAR2P1
Orthology - Evolution
OrthoDB440905
GeneTree (enSembl)ENSG00000180178
Phylogenetic Trees/Animal Genes : TreeFamFAR2P1
HOVERGENQ6ZU82
HOGENOMQ6ZU82
Homologs : HomoloGeneFAR2P1
Homology/Alignments : Family Browser (UCSC)FAR2P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAR2P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAR2P1
dbVarFAR2P1
ClinVarFAR2P1
1000_GenomesFAR2P1 
Exome Variant ServerFAR2P1
ExAC (Exome Aggregation Consortium)FAR2P1 (select the gene name)
Genetic variants : HAPMAP440905
Genomic Variants (DGV)FAR2P1 [DGVbeta]
DECIPHERFAR2P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAR2P1 
Mutations
ICGC Data PortalFAR2P1 
TCGA Data PortalFAR2P1 
Broad Tumor PortalFAR2P1
OASIS PortalFAR2P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAR2P1
BioMutasearch FAR2P1
DgiDB (Drug Gene Interaction Database)FAR2P1
DoCM (Curated mutations)FAR2P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAR2P1 (select a term)
intoGenFAR2P1
Cancer3DFAR2P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAR2P1
Genetic Testing Registry FAR2P1
NextProtQ6ZU82 [Medical]
TSGene440905
GENETestsFAR2P1
Target ValidationFAR2P1
Huge Navigator FAR2P1 [HugePedia]
snp3D : Map Gene to Disease440905
BioCentury BCIQFAR2P1
ClinGenFAR2P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440905
Clinical trialFAR2P1
Miscellaneous
canSAR (ICR)FAR2P1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAR2P1
EVEXFAR2P1
GoPubMedFAR2P1
iHOPFAR2P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:48:56 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.