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FARSA (phenylalanyl-tRNA synthetase, alpha subunit)

Identity

Other namesCML33
FARSL
FARSLA
FRSA
PheHA
HGNC (Hugo) FARSA
LocusID (NCBI) 2193
Location 19p13.2
Location_base_pair Starts at 13033284 and ends at 13044558 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FARSA   3592
Entrez_Gene (NCBI)FARSA  2193  phenylalanyl-tRNA synthetase, alpha subunit
Cards
GeneCards (Weizmann)FARSA
Ensembl (Hinxton)ENSG00000179115 [Gene_View]  chr19:13033284-13044558 [Contig_View]  FARSA [Vega]
AceView (NCBI)FARSA
Genatlas (Paris)FARSA
SOURCE (Stanford)NM_004461
Genomic and cartography
GoldenPath (UCSC)FARSA  -  19p13.2   chr19:13033284-13044558 -  19p13.2   [Description]    (hg19-Feb_2009)
EnsemblFARSA - 19p13.2 [CytoView]
Mapping of homologs : NCBIFARSA [Mapview]
OMIM602918   
Gene and transcription
Genbank (Entrez)AF042347 AK092093 AK130195 AK304587 BC006495
RefSeq transcript (SRS)NM_004461
RefSeq transcript (Entrez)NM_004461
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838483 NW_004078098
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838483 NW_004078098
Consensus coding sequences : CCDS (NCBI)FARSA
Cluster EST : UnigeneHs.23111 [ SRS ] Hs.23111 [ NCBI ]
CGAP (NCI)Hs.23111
Alternative Splicing : Fast-db (Paris)GSHG0015548
Alternative Splicing GalleryENSG00000179115
Gene ExpressionFARSA [ NCBI-GEO ]   FARSA [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y285 (SRS) Q9Y285 (Uniprot)
NextProtQ9Y285
With graphics : InterProQ9Y285
Splice isoforms : SwissVarQ9Y285(Swissvar)
Domaine pattern : Prosite (SRS)AA_TRNA_LIGASE_II (PS50862)   
Domaine pattern : Prosite (Expaxy)AA_TRNA_LIGASE_II (PS50862)   
Domains : Interpro (SRS)aa-tRNA-synth_II    Phe-tRNA-synth_IIc_asu    Phenylalanyl-tRNA_Synthase    WHTH_DNA-bd_dom   
Domains : Interpro (EBI)aa-tRNA-synth_II    Phe-tRNA-synth_IIc_asu    Phenylalanyl-tRNA_Synthase    WHTH_DNA-bd_dom   
Related proteins : CluSTrQ9Y285
Domain families : Pfam (SRS)tRNA-synt_2d (PF01409)   
Domain families : Pfam (Sanger)tRNA-synt_2d (PF01409)   
Domain families : Pfam (NCBI)pfam01409   
DMDM2193
Blocks (Seattle)Q9Y285
PDB (SRS)3L4G   
PDB (PDBSum)3L4G   
PDB (IMB)3L4G   
PDB (RSDB)3L4G   
Human Protein AtlasENSG00000179115
HPRD04227
IPIIPI00031820   IPI00909657   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y285
IntAct (EBI)Q9Y285
FunCoupENSG00000179115
REACTOMEFARSA
Protein Interaction Database2193
BioGRIDFARSA
InParanoidQ9Y285
Interologous Interaction database Q9Y285
IntegromeDBFARSA
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FARSA
SNP (GeneSNP Utah)FARSA
SNP : HGBaseFARSA
Genetic variants : HAPMAPFARSA
Somatic Mutations in Cancer : COSMICFARSA 
CONAN: Copy Number AnalysisFARSA 
Mutations and Diseases : HGMDFARSA
OMIM602918   
GENETests602918   
Disease Genetic AssociationFARSA
Huge Navigator FARSA [HugePedia]  FARSA [HugeCancerGEM]
Genomic VariantsFARSA  FARSA [DGVbeta]
ClinVarFARSA
snp3D : Map Gene to Disease2193
General knowledge
Homologs : HomoloGeneFARSA
Homology/Alignments : Family Browser (UCSC)FARSA
Phylogenetic Trees/Animal Genes : TreeFamFARSA
Catalytic activity : Enzyme6.1.1.20 [ Enzyme-Expasy ]   6.1.1.20 [ Enzyme-SRS ]   6.1.1.20 [ IntEnz-EBI ]   6.1.1.20 [ BRENDA ]   6.1.1.20 [ KEGG ]   
Chemical/Protein Interactions : CTD2193
Chemical/Pharm GKB GenePA28005
Clinical trialFARSA
Cancer Resource (Charite)ENSG00000179115
Ontology : AmiGOtRNA binding  phenylalanine-tRNA ligase activity  protein binding  ATP binding  cytoplasm  cytosol  tRNA aminoacylation for protein translation  phenylalanyl-tRNA aminoacylation  gene expression  
Ontology : EGO-EBItRNA binding  phenylalanine-tRNA ligase activity  protein binding  ATP binding  cytoplasm  cytosol  tRNA aminoacylation for protein translation  phenylalanyl-tRNA aminoacylation  gene expression  
Pathways : KEGGAminoacyl-tRNA biosynthesisPhenylalanine, tyrosine and tryptophan biosynthesis
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
PubGeneFARSA
iHOPFARSA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:34:02 CEST 2013
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