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FASTKD1 (FAST kinase domains 1)

Identity

Alias_symbol (synonym)FLJ21901
Other alias-
HGNC (Hugo) FASTKD1
LocusID (NCBI) 79675
Atlas_Id 63302
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 169528508 and ends at 169573921 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PKN2 (1p22.2) / FASTKD1 (2q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FASTKD1   26150
Cards
Entrez_Gene (NCBI)FASTKD1  79675  FAST kinase domains 1
Aliases
GeneCards (Weizmann)FASTKD1
Ensembl hg19 (Hinxton)ENSG00000138399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138399 [Gene_View]  chr2:169528508-169573921 [Contig_View]  FASTKD1 [Vega]
ICGC DataPortalENSG00000138399
TCGA cBioPortalFASTKD1
AceView (NCBI)FASTKD1
Genatlas (Paris)FASTKD1
WikiGenes79675
SOURCE (Princeton)FASTKD1
Genetics Home Reference (NIH)FASTKD1
Genomic and cartography
GoldenPath hg38 (UCSC)FASTKD1  -     chr2:169528508-169573921 -  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FASTKD1  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblFASTKD1 - 2q31.1 [CytoView hg19]  FASTKD1 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIFASTKD1 [Mapview hg19]  FASTKD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058703 AK025554 AK055892 AK074302 AK130797
RefSeq transcript (Entrez)NM_001281476 NM_001322046 NM_001322048 NM_001322049 NM_024622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FASTKD1
Cluster EST : UnigeneHs.529276 [ NCBI ]
CGAP (NCI)Hs.529276
Alternative Splicing GalleryENSG00000138399
Gene ExpressionFASTKD1 [ NCBI-GEO ]   FASTKD1 [ EBI - ARRAY_EXPRESS ]   FASTKD1 [ SEEK ]   FASTKD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FASTKD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79675
GTEX Portal (Tissue expression)FASTKD1
Human Protein AtlasENSG00000138399-FASTKD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53R41   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53R41  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53R41
Splice isoforms : SwissVarQ53R41
PhosPhoSitePlusQ53R41
Domaine pattern : Prosite (Expaxy)RAP (PS51286)   
Domains : Interpro (EBI)FAST_2    FAST_Leu-rich    RAP   
Domain families : Pfam (Sanger)FAST_1 (PF06743)    FAST_2 (PF08368)    RAP (PF08373)   
Domain families : Pfam (NCBI)pfam06743    pfam08368    pfam08373   
Domain families : Smart (EMBL)RAP (SM00952)  
Conserved Domain (NCBI)FASTKD1
DMDM Disease mutations79675
Blocks (Seattle)FASTKD1
SuperfamilyQ53R41
Human Protein Atlas [tissue]ENSG00000138399-FASTKD1 [tissue]
Peptide AtlasQ53R41
HPRD07969
IPIIPI00300186   IPI00289061   IPI00807371   IPI00925009   IPI00386852   
Protein Interaction databases
DIP (DOE-UCLA)Q53R41
IntAct (EBI)Q53R41
FunCoupENSG00000138399
BioGRIDFASTKD1
STRING (EMBL)FASTKD1
ZODIACFASTKD1
Ontologies - Pathways
QuickGOQ53R41
Ontology : AmiGORNA binding  protein kinase activity  mitochondrion  protein phosphorylation  cellular respiration  
Ontology : EGO-EBIRNA binding  protein kinase activity  mitochondrion  protein phosphorylation  cellular respiration  
NDEx NetworkFASTKD1
Atlas of Cancer Signalling NetworkFASTKD1
Wikipedia pathwaysFASTKD1
Orthology - Evolution
OrthoDB79675
GeneTree (enSembl)ENSG00000138399
Phylogenetic Trees/Animal Genes : TreeFamFASTKD1
HOVERGENQ53R41
HOGENOMQ53R41
Homologs : HomoloGeneFASTKD1
Homology/Alignments : Family Browser (UCSC)FASTKD1
Gene fusions - Rearrangements
Fusion: Tumor Portal FASTKD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFASTKD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FASTKD1
dbVarFASTKD1
ClinVarFASTKD1
1000_GenomesFASTKD1 
Exome Variant ServerFASTKD1
ExAC (Exome Aggregation Consortium)ENSG00000138399
GNOMAD BrowserENSG00000138399
Genetic variants : HAPMAP79675
Genomic Variants (DGV)FASTKD1 [DGVbeta]
DECIPHERFASTKD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFASTKD1 
Mutations
ICGC Data PortalFASTKD1 
TCGA Data PortalFASTKD1 
Broad Tumor PortalFASTKD1
OASIS PortalFASTKD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFASTKD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFASTKD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FASTKD1
DgiDB (Drug Gene Interaction Database)FASTKD1
DoCM (Curated mutations)FASTKD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FASTKD1 (select a term)
intoGenFASTKD1
Cancer3DFASTKD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFASTKD1
Genetic Testing Registry FASTKD1
NextProtQ53R41 [Medical]
TSGene79675
GENETestsFASTKD1
Target ValidationFASTKD1
Huge Navigator FASTKD1 [HugePedia]
snp3D : Map Gene to Disease79675
BioCentury BCIQFASTKD1
ClinGenFASTKD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79675
Chemical/Pharm GKB GenePA145148834
Clinical trialFASTKD1
Miscellaneous
canSAR (ICR)FASTKD1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFASTKD1
EVEXFASTKD1
GoPubMedFASTKD1
iHOPFASTKD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:47:31 CET 2017

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