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FASTKD2 (FAST kinase domains 2)

Identity

Alias_namesKIAA0971
KIAA0971
HGNC (Hugo) FASTKD2
LocusID (NCBI) 22868
Atlas_Id 52337
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 207630112 and ends at 207660911 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CREB1 (2q33.3) / FASTKD2 (2q33.3)FASTKD2 (2q33.3) / NVL (1q42.11)CREB1 2q33.3 / FASTKD2 2q33.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FASTKD2   29160
Cards
Entrez_Gene (NCBI)FASTKD2  22868  FAST kinase domains 2
AliasesKIAA0971
GeneCards (Weizmann)FASTKD2
Ensembl hg19 (Hinxton)ENSG00000118246 [Gene_View]  chr2:207630112-207660911 [Contig_View]  FASTKD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000118246 [Gene_View]  chr2:207630112-207660911 [Contig_View]  FASTKD2 [Vega]
ICGC DataPortalENSG00000118246
TCGA cBioPortalFASTKD2
AceView (NCBI)FASTKD2
Genatlas (Paris)FASTKD2
WikiGenes22868
SOURCE (Princeton)FASTKD2
Genetics Home Reference (NIH)FASTKD2
Genomic and cartography
GoldenPath hg19 (UCSC)FASTKD2  -     chr2:207630112-207660911 +  2q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FASTKD2  -     2q33.3   [Description]    (hg38-Dec_2013)
EnsemblFASTKD2 - 2q33.3 [CytoView hg19]  FASTKD2 - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBIFASTKD2 [Mapview hg19]  FASTKD2 [Mapview hg38]
OMIM220110   612322   
Gene and transcription
Genbank (Entrez)AB023188 AF223470 AK001315 AK001516 AK021557
RefSeq transcript (Entrez)NM_001136193 NM_001136194 NM_014929
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_008984 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)FASTKD2
Cluster EST : UnigeneHs.722628 [ NCBI ]
CGAP (NCI)Hs.722628
Alternative Splicing GalleryENSG00000118246
Gene ExpressionFASTKD2 [ NCBI-GEO ]   FASTKD2 [ EBI - ARRAY_EXPRESS ]   FASTKD2 [ SEEK ]   FASTKD2 [ MEM ]
Gene Expression Viewer (FireBrowse)FASTKD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22868
GTEX Portal (Tissue expression)FASTKD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYY8
Splice isoforms : SwissVarQ9NYY8
PhosPhoSitePlusQ9NYY8
Domaine pattern : Prosite (Expaxy)RAP (PS51286)   
Domains : Interpro (EBI)FAST_2    FAST_Leu-rich    RAP   
Domain families : Pfam (Sanger)FAST_1 (PF06743)    FAST_2 (PF08368)    RAP (PF08373)   
Domain families : Pfam (NCBI)pfam06743    pfam08368    pfam08373   
Domain families : Smart (EMBL)RAP (SM00952)  
Conserved Domain (NCBI)FASTKD2
DMDM Disease mutations22868
Blocks (Seattle)FASTKD2
SuperfamilyQ9NYY8
Human Protein AtlasENSG00000118246
Peptide AtlasQ9NYY8
HPRD13825
IPIIPI00013735   IPI00479951   IPI00952735   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYY8
IntAct (EBI)Q9NYY8
FunCoupENSG00000118246
BioGRIDFASTKD2
STRING (EMBL)FASTKD2
ZODIACFASTKD2
Ontologies - Pathways
QuickGOQ9NYY8
Ontology : AmiGOprotein kinase activity  mitochondrion  protein phosphorylation  rRNA binding  ribonucleoprotein granule  mitochondrial nucleoid  poly(A) RNA binding  cellular respiration  mitochondrial large ribosomal subunit assembly  
Ontology : EGO-EBIprotein kinase activity  mitochondrion  protein phosphorylation  rRNA binding  ribonucleoprotein granule  mitochondrial nucleoid  poly(A) RNA binding  cellular respiration  mitochondrial large ribosomal subunit assembly  
NDEx NetworkFASTKD2
Atlas of Cancer Signalling NetworkFASTKD2
Wikipedia pathwaysFASTKD2
Orthology - Evolution
OrthoDB22868
GeneTree (enSembl)ENSG00000118246
Phylogenetic Trees/Animal Genes : TreeFamFASTKD2
HOVERGENQ9NYY8
HOGENOMQ9NYY8
Homologs : HomoloGeneFASTKD2
Homology/Alignments : Family Browser (UCSC)FASTKD2
Gene fusions - Rearrangements
Fusion : MitelmanCREB1/FASTKD2 [2q33.3/2q33.3]  [t(2;2)(q33;q33)]  
Fusion: TCGACREB1 2q33.3 FASTKD2 2q33.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFASTKD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FASTKD2
dbVarFASTKD2
ClinVarFASTKD2
1000_GenomesFASTKD2 
Exome Variant ServerFASTKD2
ExAC (Exome Aggregation Consortium)FASTKD2 (select the gene name)
Genetic variants : HAPMAP22868
Genomic Variants (DGV)FASTKD2 [DGVbeta]
DECIPHER (Syndromes)2:207630112-207660911  ENSG00000118246
CONAN: Copy Number AnalysisFASTKD2 
Mutations
ICGC Data PortalFASTKD2 
TCGA Data PortalFASTKD2 
Broad Tumor PortalFASTKD2
OASIS PortalFASTKD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFASTKD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFASTKD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch FASTKD2
DgiDB (Drug Gene Interaction Database)FASTKD2
DoCM (Curated mutations)FASTKD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FASTKD2 (select a term)
intoGenFASTKD2
Cancer3DFASTKD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM220110    612322   
Orphanet17619   
MedgenFASTKD2
Genetic Testing Registry FASTKD2
NextProtQ9NYY8 [Medical]
TSGene22868
GENETestsFASTKD2
Huge Navigator FASTKD2 [HugePedia]
snp3D : Map Gene to Disease22868
BioCentury BCIQFASTKD2
ClinGenFASTKD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22868
Chemical/Pharm GKB GenePA134974924
Clinical trialFASTKD2
Miscellaneous
canSAR (ICR)FASTKD2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFASTKD2
EVEXFASTKD2
GoPubMedFASTKD2
iHOPFASTKD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:37:13 CET 2016

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