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FASTKD3 (FAST kinase domains 3)

Identity

Alias_symbol (synonym)MGC5297
FLJ23274
Other alias-
HGNC (Hugo) FASTKD3
LocusID (NCBI) 79072
Atlas_Id 63303
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 7859159 and ends at 7869037 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FASTKD3   28758
Cards
Entrez_Gene (NCBI)FASTKD3  79072  FAST kinase domains 3
Aliases
GeneCards (Weizmann)FASTKD3
Ensembl hg19 (Hinxton)ENSG00000124279 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124279 [Gene_View]  chr5:7859159-7869037 [Contig_View]  FASTKD3 [Vega]
ICGC DataPortalENSG00000124279
TCGA cBioPortalFASTKD3
AceView (NCBI)FASTKD3
Genatlas (Paris)FASTKD3
WikiGenes79072
SOURCE (Princeton)FASTKD3
Genetics Home Reference (NIH)FASTKD3
Genomic and cartography
GoldenPath hg38 (UCSC)FASTKD3  -     chr5:7859159-7869037 -  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FASTKD3  -     5p15.31   [Description]    (hg19-Feb_2009)
EnsemblFASTKD3 - 5p15.31 [CytoView hg19]  FASTKD3 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBIFASTKD3 [Mapview hg19]  FASTKD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161354 AK026927 BC001295 BC113563 BC143517
RefSeq transcript (Entrez)NM_024091
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FASTKD3
Cluster EST : UnigeneHs.653162 [ NCBI ]
CGAP (NCI)Hs.653162
Alternative Splicing GalleryENSG00000124279
Gene ExpressionFASTKD3 [ NCBI-GEO ]   FASTKD3 [ EBI - ARRAY_EXPRESS ]   FASTKD3 [ SEEK ]   FASTKD3 [ MEM ]
Gene Expression Viewer (FireBrowse)FASTKD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79072
GTEX Portal (Tissue expression)FASTKD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CZ7
Splice isoforms : SwissVarQ14CZ7
PhosPhoSitePlusQ14CZ7
Domaine pattern : Prosite (Expaxy)RAP (PS51286)   
Domains : Interpro (EBI)FAST_2    FAST_Leu-rich    RAP   
Domain families : Pfam (Sanger)FAST_1 (PF06743)    FAST_2 (PF08368)    RAP (PF08373)   
Domain families : Pfam (NCBI)pfam06743    pfam08368    pfam08373   
Domain families : Smart (EMBL)RAP (SM00952)  
Conserved Domain (NCBI)FASTKD3
DMDM Disease mutations79072
Blocks (Seattle)FASTKD3
SuperfamilyQ14CZ7
Human Protein AtlasENSG00000124279
Peptide AtlasQ14CZ7
HPRD10083
IPIIPI00031696   IPI00292255   IPI00964012   IPI00964536   IPI00965473   IPI00965990   
Protein Interaction databases
DIP (DOE-UCLA)Q14CZ7
IntAct (EBI)Q14CZ7
FunCoupENSG00000124279
BioGRIDFASTKD3
STRING (EMBL)FASTKD3
ZODIACFASTKD3
Ontologies - Pathways
QuickGOQ14CZ7
Ontology : AmiGORNA binding  protein kinase activity  protein binding  nucleus  mitochondrion  protein phosphorylation  cellular respiration  
Ontology : EGO-EBIRNA binding  protein kinase activity  protein binding  nucleus  mitochondrion  protein phosphorylation  cellular respiration  
NDEx NetworkFASTKD3
Atlas of Cancer Signalling NetworkFASTKD3
Wikipedia pathwaysFASTKD3
Orthology - Evolution
OrthoDB79072
GeneTree (enSembl)ENSG00000124279
Phylogenetic Trees/Animal Genes : TreeFamFASTKD3
HOVERGENQ14CZ7
HOGENOMQ14CZ7
Homologs : HomoloGeneFASTKD3
Homology/Alignments : Family Browser (UCSC)FASTKD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFASTKD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FASTKD3
dbVarFASTKD3
ClinVarFASTKD3
1000_GenomesFASTKD3 
Exome Variant ServerFASTKD3
ExAC (Exome Aggregation Consortium)FASTKD3 (select the gene name)
Genetic variants : HAPMAP79072
Genomic Variants (DGV)FASTKD3 [DGVbeta]
DECIPHERFASTKD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFASTKD3 
Mutations
ICGC Data PortalFASTKD3 
TCGA Data PortalFASTKD3 
Broad Tumor PortalFASTKD3
OASIS PortalFASTKD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFASTKD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFASTKD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FASTKD3
DgiDB (Drug Gene Interaction Database)FASTKD3
DoCM (Curated mutations)FASTKD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FASTKD3 (select a term)
intoGenFASTKD3
Cancer3DFASTKD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFASTKD3
Genetic Testing Registry FASTKD3
NextProtQ14CZ7 [Medical]
TSGene79072
GENETestsFASTKD3
Target ValidationFASTKD3
Huge Navigator FASTKD3 [HugePedia]
snp3D : Map Gene to Disease79072
BioCentury BCIQFASTKD3
ClinGenFASTKD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79072
Chemical/Pharm GKB GenePA145148868
Clinical trialFASTKD3
Miscellaneous
canSAR (ICR)FASTKD3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFASTKD3
EVEXFASTKD3
GoPubMedFASTKD3
iHOPFASTKD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:19 CEST 2017

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