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FASTKD5 (FAST kinase domains 5)

Identity

Alias_symbol (synonym)FLJ13149
Other aliasdJ1187M17.5
HGNC (Hugo) FASTKD5
LocusID (NCBI) 60493
Atlas_Id 63304
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3146519 and ends at 3159886 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FASTKD5   25790
Cards
Entrez_Gene (NCBI)FASTKD5  60493  FAST kinase domains 5
AliasesdJ1187M17.5
GeneCards (Weizmann)FASTKD5
Ensembl hg19 (Hinxton)ENSG00000215251 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215251 [Gene_View]  chr20:3146519-3159886 [Contig_View]  FASTKD5 [Vega]
ICGC DataPortalENSG00000215251
TCGA cBioPortalFASTKD5
AceView (NCBI)FASTKD5
Genatlas (Paris)FASTKD5
WikiGenes60493
SOURCE (Princeton)FASTKD5
Genetics Home Reference (NIH)FASTKD5
Genomic and cartography
GoldenPath hg38 (UCSC)FASTKD5  -     chr20:3146519-3159886 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FASTKD5  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblFASTKD5 - 20p13 [CytoView hg19]  FASTKD5 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIFASTKD5 [Mapview hg19]  FASTKD5 [Mapview hg38]
OMIM614272   
Gene and transcription
Genbank (Entrez)AB058695 AK023211 AK027215 AK301748 AW182833
RefSeq transcript (Entrez)NM_021826
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FASTKD5
Cluster EST : UnigeneHs.741168 [ NCBI ]
CGAP (NCI)Hs.741168
Alternative Splicing GalleryENSG00000215251
Gene ExpressionFASTKD5 [ NCBI-GEO ]   FASTKD5 [ EBI - ARRAY_EXPRESS ]   FASTKD5 [ SEEK ]   FASTKD5 [ MEM ]
Gene Expression Viewer (FireBrowse)FASTKD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60493
GTEX Portal (Tissue expression)FASTKD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L8L6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L8L6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L8L6
Splice isoforms : SwissVarQ7L8L6
PhosPhoSitePlusQ7L8L6
Domaine pattern : Prosite (Expaxy)RAP (PS51286)   
Domains : Interpro (EBI)FAST_2    FAST_Leu-rich    RAP   
Domain families : Pfam (Sanger)FAST_1 (PF06743)    FAST_2 (PF08368)    RAP (PF08373)   
Domain families : Pfam (NCBI)pfam06743    pfam08368    pfam08373   
Domain families : Smart (EMBL)RAP (SM00952)  
Conserved Domain (NCBI)FASTKD5
DMDM Disease mutations60493
Blocks (Seattle)FASTKD5
SuperfamilyQ7L8L6
Human Protein AtlasENSG00000215251
Peptide AtlasQ7L8L6
HPRD07813
IPIIPI00414973   
Protein Interaction databases
DIP (DOE-UCLA)Q7L8L6
IntAct (EBI)Q7L8L6
FunCoupENSG00000215251
BioGRIDFASTKD5
STRING (EMBL)FASTKD5
ZODIACFASTKD5
Ontologies - Pathways
QuickGOQ7L8L6
Ontology : AmiGOmitochondrial RNA processing  RNA binding  protein kinase activity  protein binding  mitochondrion  mRNA processing  protein phosphorylation  rRNA binding  ribonucleoprotein granule  mitochondrial nucleoid  cellular respiration  
Ontology : EGO-EBImitochondrial RNA processing  RNA binding  protein kinase activity  protein binding  mitochondrion  mRNA processing  protein phosphorylation  rRNA binding  ribonucleoprotein granule  mitochondrial nucleoid  cellular respiration  
NDEx NetworkFASTKD5
Atlas of Cancer Signalling NetworkFASTKD5
Wikipedia pathwaysFASTKD5
Orthology - Evolution
OrthoDB60493
GeneTree (enSembl)ENSG00000215251
Phylogenetic Trees/Animal Genes : TreeFamFASTKD5
HOVERGENQ7L8L6
HOGENOMQ7L8L6
Homologs : HomoloGeneFASTKD5
Homology/Alignments : Family Browser (UCSC)FASTKD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFASTKD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FASTKD5
dbVarFASTKD5
ClinVarFASTKD5
1000_GenomesFASTKD5 
Exome Variant ServerFASTKD5
ExAC (Exome Aggregation Consortium)FASTKD5 (select the gene name)
Genetic variants : HAPMAP60493
Genomic Variants (DGV)FASTKD5 [DGVbeta]
DECIPHERFASTKD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFASTKD5 
Mutations
ICGC Data PortalFASTKD5 
TCGA Data PortalFASTKD5 
Broad Tumor PortalFASTKD5
OASIS PortalFASTKD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFASTKD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFASTKD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FASTKD5
DgiDB (Drug Gene Interaction Database)FASTKD5
DoCM (Curated mutations)FASTKD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FASTKD5 (select a term)
intoGenFASTKD5
Cancer3DFASTKD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614272   
Orphanet
MedgenFASTKD5
Genetic Testing Registry FASTKD5
NextProtQ7L8L6 [Medical]
TSGene60493
GENETestsFASTKD5
Target ValidationFASTKD5
Huge Navigator FASTKD5 [HugePedia]
snp3D : Map Gene to Disease60493
BioCentury BCIQFASTKD5
ClinGenFASTKD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60493
Chemical/Pharm GKB GenePA145148886
Clinical trialFASTKD5
Miscellaneous
canSAR (ICR)FASTKD5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFASTKD5
EVEXFASTKD5
GoPubMedFASTKD5
iHOPFASTKD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:58 CEST 2017

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