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FAT3 (FAT atypical cadherin 3)

Identity

Alias_namesFAT tumor suppressor homolog 3 (Drosophila)
Alias_symbol (synonym)KIAA1989
CDHF15
CDHR10
Other aliashFat3
HGNC (Hugo) FAT3
LocusID (NCBI) 120114
Atlas_Id 40536
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 92352096 and ends at 92896469 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHD6 (20q12) / FAT3 (11q14.3)FAT3 (11q14.3) / ACOX1 (17q25.1)FAT3 (11q14.3) / CDH26 (20q13.33)
FAT3 (11q14.3) / DPP3 (11q13.2)FAT3 (11q14.3) / FAT3 (11q14.3)HESX1 (3p14.3) / FAT3 (11q14.3)
PAK1 (11q13.5) / FAT3 (11q14.3)CHD6 20q12 / FAT3 11q14.3FAT3 11q14.3 / CDH26 20q13.33
FAT3 11q14.3 / DPP3 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAT3   23112
Cards
Entrez_Gene (NCBI)FAT3  120114  FAT atypical cadherin 3
AliasesCDHF15; CDHR10; hFat3
GeneCards (Weizmann)FAT3
Ensembl hg19 (Hinxton)ENSG00000165323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165323 [Gene_View]  chr11:92352096-92896469 [Contig_View]  FAT3 [Vega]
ICGC DataPortalENSG00000165323
TCGA cBioPortalFAT3
AceView (NCBI)FAT3
Genatlas (Paris)FAT3
WikiGenes120114
SOURCE (Princeton)FAT3
Genetics Home Reference (NIH)FAT3
Genomic and cartography
GoldenPath hg38 (UCSC)FAT3  -     chr11:92352096-92896469 +  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAT3  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblFAT3 - 11q14.3 [CytoView hg19]  FAT3 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBIFAT3 [Mapview hg19]  FAT3 [Mapview hg38]
OMIM612483   
Gene and transcription
Genbank (Entrez)AB076400 AK054903 AK091570 AK126620 AK127104
RefSeq transcript (Entrez)NM_001008781
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAT3
Cluster EST : UnigeneHs.98523 [ NCBI ]
CGAP (NCI)Hs.98523
Alternative Splicing GalleryENSG00000165323
Gene ExpressionFAT3 [ NCBI-GEO ]   FAT3 [ EBI - ARRAY_EXPRESS ]   FAT3 [ SEEK ]   FAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)FAT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120114
GTEX Portal (Tissue expression)FAT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDW7
Splice isoforms : SwissVarQ8TDW7
PhosPhoSitePlusQ8TDW7
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    LAM_G_DOMAIN (PS50025)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    ConA-like_dom    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Laminin_G   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Laminin_G_2 (PF02210)   
Domain families : Pfam (NCBI)pfam00028    pfam02210   
Domain families : Smart (EMBL)CA (SM00112)  EGF (SM00181)  EGF_CA (SM00179)  LamG (SM00282)  
Conserved Domain (NCBI)FAT3
DMDM Disease mutations120114
Blocks (Seattle)FAT3
SuperfamilyQ8TDW7
Human Protein AtlasENSG00000165323
Peptide AtlasQ8TDW7
IPIIPI00847978   IPI00888216   IPI00973508   IPI01018904   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDW7
IntAct (EBI)Q8TDW7
FunCoupENSG00000165323
BioGRIDFAT3
STRING (EMBL)FAT3
ZODIACFAT3
Ontologies - Pathways
QuickGOQ8TDW7
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  multicellular organism development  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  multicellular organism development  integral component of membrane  
NDEx NetworkFAT3
Atlas of Cancer Signalling NetworkFAT3
Wikipedia pathwaysFAT3
Orthology - Evolution
OrthoDB120114
GeneTree (enSembl)ENSG00000165323
Phylogenetic Trees/Animal Genes : TreeFamFAT3
HOVERGENQ8TDW7
HOGENOMQ8TDW7
Homologs : HomoloGeneFAT3
Homology/Alignments : Family Browser (UCSC)FAT3
Gene fusions - Rearrangements
Fusion : MitelmanCHD6/FAT3 [20q12/11q14.3]  [t(11;20)(q14;q12)]  
Fusion : MitelmanFAT3/CDH26 [11q14.3/20q13.33]  [t(11;20)(q14;q13)]  
Fusion : MitelmanFAT3/DPP3 [11q14.3/11q13.2]  [t(11;11)(q13;q14)]  
Fusion: TCGACHD6 20q12 FAT3 11q14.3 LUAD
Fusion: TCGAFAT3 11q14.3 CDH26 20q13.33 LUAD
Fusion: TCGAFAT3 11q14.3 DPP3 11q13.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAT3
dbVarFAT3
ClinVarFAT3
1000_GenomesFAT3 
Exome Variant ServerFAT3
ExAC (Exome Aggregation Consortium)FAT3 (select the gene name)
Genetic variants : HAPMAP120114
Genomic Variants (DGV)FAT3 [DGVbeta]
DECIPHERFAT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAT3 
Mutations
ICGC Data PortalFAT3 
TCGA Data PortalFAT3 
Broad Tumor PortalFAT3
OASIS PortalFAT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAT3
DgiDB (Drug Gene Interaction Database)FAT3
DoCM (Curated mutations)FAT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAT3 (select a term)
intoGenFAT3
Cancer3DFAT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612483   
Orphanet
MedgenFAT3
Genetic Testing Registry FAT3
NextProtQ8TDW7 [Medical]
TSGene120114
GENETestsFAT3
Huge Navigator FAT3 [HugePedia]
snp3D : Map Gene to Disease120114
BioCentury BCIQFAT3
ClinGenFAT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120114
Chemical/Pharm GKB GenePA134962612
Clinical trialFAT3
Miscellaneous
canSAR (ICR)FAT3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAT3
EVEXFAT3
GoPubMedFAT3
iHOPFAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:33 CEST 2017

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