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FATE1 (fetal and adult testis expressed 1)

Identity

Alias_symbol (synonym)FATE
CT43
Other alias
HGNC (Hugo) FATE1
LocusID (NCBI) 89885
Atlas_Id 55770
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 150884508 and ends at 150891664 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FATE1 (Xq28) / TMEM131 (2q11.2)MTMR1 (Xq28) / FATE1 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FATE1   24683
Cards
Entrez_Gene (NCBI)FATE1  89885  fetal and adult testis expressed 1
AliasesCT43; FATE
GeneCards (Weizmann)FATE1
Ensembl hg19 (Hinxton)ENSG00000147378 [Gene_View]  chrX:150884508-150891664 [Contig_View]  FATE1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147378 [Gene_View]  chrX:150884508-150891664 [Contig_View]  FATE1 [Vega]
ICGC DataPortalENSG00000147378
TCGA cBioPortalFATE1
AceView (NCBI)FATE1
Genatlas (Paris)FATE1
WikiGenes89885
SOURCE (Princeton)FATE1
Genetics Home Reference (NIH)FATE1
Genomic and cartography
GoldenPath hg19 (UCSC)FATE1  -     chrX:150884508-150891664 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FATE1  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblFATE1 - Xq28 [CytoView hg19]  FATE1 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIFATE1 [Mapview hg19]  FATE1 [Mapview hg38]
OMIM300450   
Gene and transcription
Genbank (Entrez)AF249872 AM393498 AY101182 BC022064 DQ892418
RefSeq transcript (Entrez)NM_033085
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016398 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)FATE1
Cluster EST : UnigeneHs.301960 [ NCBI ]
CGAP (NCI)Hs.301960
Alternative Splicing GalleryENSG00000147378
Gene ExpressionFATE1 [ NCBI-GEO ]   FATE1 [ EBI - ARRAY_EXPRESS ]   FATE1 [ SEEK ]   FATE1 [ MEM ]
Gene Expression Viewer (FireBrowse)FATE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89885
GTEX Portal (Tissue expression)FATE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969F0
Splice isoforms : SwissVarQ969F0
PhosPhoSitePlusQ969F0
Domains : Interpro (EBI)FATE/Miff/Tango-11   
Domain families : Pfam (Sanger)Miff (PF05644)   
Domain families : Pfam (NCBI)pfam05644   
Conserved Domain (NCBI)FATE1
DMDM Disease mutations89885
Blocks (Seattle)FATE1
SuperfamilyQ969F0
Human Protein AtlasENSG00000147378
Peptide AtlasQ969F0
HPRD02346
IPIIPI00056317   IPI00642610   
Protein Interaction databases
DIP (DOE-UCLA)Q969F0
IntAct (EBI)Q969F0
FunCoupENSG00000147378
BioGRIDFATE1
STRING (EMBL)FATE1
ZODIACFATE1
Ontologies - Pathways
QuickGOQ969F0
Ontology : AmiGOprotein binding  endoplasmic reticulum  integral component of membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  integral component of membrane  
NDEx NetworkFATE1
Atlas of Cancer Signalling NetworkFATE1
Wikipedia pathwaysFATE1
Orthology - Evolution
OrthoDB89885
GeneTree (enSembl)ENSG00000147378
Phylogenetic Trees/Animal Genes : TreeFamFATE1
HOVERGENQ969F0
HOGENOMQ969F0
Homologs : HomoloGeneFATE1
Homology/Alignments : Family Browser (UCSC)FATE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFATE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FATE1
dbVarFATE1
ClinVarFATE1
1000_GenomesFATE1 
Exome Variant ServerFATE1
ExAC (Exome Aggregation Consortium)FATE1 (select the gene name)
Genetic variants : HAPMAP89885
Genomic Variants (DGV)FATE1 [DGVbeta]
DECIPHER (Syndromes)X:150884508-150891664  ENSG00000147378
CONAN: Copy Number AnalysisFATE1 
Mutations
ICGC Data PortalFATE1 
TCGA Data PortalFATE1 
Broad Tumor PortalFATE1
OASIS PortalFATE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFATE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFATE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FATE1
DgiDB (Drug Gene Interaction Database)FATE1
DoCM (Curated mutations)FATE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FATE1 (select a term)
intoGenFATE1
Cancer3DFATE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300450   
Orphanet
MedgenFATE1
Genetic Testing Registry FATE1
NextProtQ969F0 [Medical]
TSGene89885
GENETestsFATE1
Huge Navigator FATE1 [HugePedia]
snp3D : Map Gene to Disease89885
BioCentury BCIQFATE1
ClinGenFATE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89885
Chemical/Pharm GKB GenePA134875203
Clinical trialFATE1
Miscellaneous
canSAR (ICR)FATE1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFATE1
EVEXFATE1
GoPubMedFATE1
iHOPFATE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:39 CET 2017

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