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FAXDC2 (fatty acid hydroxylase domain containing 2)

Identity

Alias_namesC5orf4
chromosome 5 open reading frame 4
Alias_symbol (synonym)FLJ13758
Other alias
HGNC (Hugo) FAXDC2
LocusID (NCBI) 10826
Atlas_Id 63307
Location 5q33.2  [Link to chromosome band 5q33]
Location_base_pair Starts at 154818492 and ends at 154850685 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GALNT10 (5q33.2) / FAXDC2 (5q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAXDC2   1334
Cards
Entrez_Gene (NCBI)FAXDC2  10826  fatty acid hydroxylase domain containing 2
AliasesC5orf4
GeneCards (Weizmann)FAXDC2
Ensembl hg19 (Hinxton)ENSG00000170271 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170271 [Gene_View]  chr5:154818492-154850685 [Contig_View]  FAXDC2 [Vega]
ICGC DataPortalENSG00000170271
TCGA cBioPortalFAXDC2
AceView (NCBI)FAXDC2
Genatlas (Paris)FAXDC2
WikiGenes10826
SOURCE (Princeton)FAXDC2
Genetics Home Reference (NIH)FAXDC2
Genomic and cartography
GoldenPath hg38 (UCSC)FAXDC2  -     chr5:154818492-154850685 -  5q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAXDC2  -     5q33.2   [Description]    (hg19-Feb_2009)
EnsemblFAXDC2 - 5q33.2 [CytoView hg19]  FAXDC2 - 5q33.2 [CytoView hg38]
Mapping of homologs : NCBIFAXDC2 [Mapview hg19]  FAXDC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF159165 AK023820 AK074245 AK127944 AK295546
RefSeq transcript (Entrez)NM_016348 NM_032385
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAXDC2
Cluster EST : UnigeneHs.713175 [ NCBI ]
CGAP (NCI)Hs.713175
Alternative Splicing GalleryENSG00000170271
Gene ExpressionFAXDC2 [ NCBI-GEO ]   FAXDC2 [ EBI - ARRAY_EXPRESS ]   FAXDC2 [ SEEK ]   FAXDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAXDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10826
GTEX Portal (Tissue expression)FAXDC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IV6
Splice isoforms : SwissVarQ96IV6
PhosPhoSitePlusQ96IV6
Domains : Interpro (EBI)Fatty_acid_hydroxylase   
Domain families : Pfam (Sanger)FA_hydroxylase (PF04116)   
Domain families : Pfam (NCBI)pfam04116   
Conserved Domain (NCBI)FAXDC2
DMDM Disease mutations10826
Blocks (Seattle)FAXDC2
SuperfamilyQ96IV6
Human Protein AtlasENSG00000170271
Peptide AtlasQ96IV6
HPRD12832
IPIIPI00063851   IPI00910468   IPI00008890   IPI00980586   IPI00974452   IPI00974381   IPI00973781   IPI00982015   IPI00974463   IPI00978798   IPI00981236   
Protein Interaction databases
DIP (DOE-UCLA)Q96IV6
IntAct (EBI)Q96IV6
FunCoupENSG00000170271
BioGRIDFAXDC2
STRING (EMBL)FAXDC2
ZODIACFAXDC2
Ontologies - Pathways
QuickGOQ96IV6
Ontology : AmiGOiron ion binding  endoplasmic reticulum membrane  lipid metabolic process  lipid biosynthetic process  integral component of membrane  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  endoplasmic reticulum membrane  lipid metabolic process  lipid biosynthetic process  integral component of membrane  oxidoreductase activity  oxidation-reduction process  
Pathways : KEGGSteroid biosynthesis   
NDEx NetworkFAXDC2
Atlas of Cancer Signalling NetworkFAXDC2
Wikipedia pathwaysFAXDC2
Orthology - Evolution
OrthoDB10826
GeneTree (enSembl)ENSG00000170271
Phylogenetic Trees/Animal Genes : TreeFamFAXDC2
HOVERGENQ96IV6
HOGENOMQ96IV6
Homologs : HomoloGeneFAXDC2
Homology/Alignments : Family Browser (UCSC)FAXDC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAXDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAXDC2
dbVarFAXDC2
ClinVarFAXDC2
1000_GenomesFAXDC2 
Exome Variant ServerFAXDC2
ExAC (Exome Aggregation Consortium)FAXDC2 (select the gene name)
Genetic variants : HAPMAP10826
Genomic Variants (DGV)FAXDC2 [DGVbeta]
DECIPHERFAXDC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAXDC2 
Mutations
ICGC Data PortalFAXDC2 
TCGA Data PortalFAXDC2 
Broad Tumor PortalFAXDC2
OASIS PortalFAXDC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAXDC2
BioMutasearch FAXDC2
DgiDB (Drug Gene Interaction Database)FAXDC2
DoCM (Curated mutations)FAXDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAXDC2 (select a term)
intoGenFAXDC2
Cancer3DFAXDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAXDC2
Genetic Testing Registry FAXDC2
NextProtQ96IV6 [Medical]
TSGene10826
GENETestsFAXDC2
Target ValidationFAXDC2
Huge Navigator FAXDC2 [HugePedia]
snp3D : Map Gene to Disease10826
BioCentury BCIQFAXDC2
ClinGenFAXDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10826
Chemical/Pharm GKB GenePA25915
Clinical trialFAXDC2
Miscellaneous
canSAR (ICR)FAXDC2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAXDC2
EVEXFAXDC2
GoPubMedFAXDC2
iHOPFAXDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:15:17 CEST 2017

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