Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FBP1 (fructose-bisphosphatase 1)

Identity

Alias (NCBI)FBP
HGNC (Hugo) FBP1
HGNC Previous nameFBP
HGNC Previous namefructose-1,6-bisphosphatase 1
LocusID (NCBI) 2203
Atlas_Id 46648
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 94603139 and ends at 94640263 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FBP1 (9q22.32) / AHCTF1 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBP1   3606
Cards
Entrez_Gene (NCBI)FBP1  2203  fructose-bisphosphatase 1
AliasesFBP
GeneCards (Weizmann)FBP1
Ensembl hg19 (Hinxton)ENSG00000165140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165140 [Gene_View]  ENSG00000165140 [Sequence]  chr9:94603139-94640263 [Contig_View]  FBP1 [Vega]
ICGC DataPortalENSG00000165140
TCGA cBioPortalFBP1
AceView (NCBI)FBP1
Genatlas (Paris)FBP1
WikiGenes2203
SOURCE (Princeton)FBP1
Genetics Home Reference (NIH)FBP1
Genomic and cartography
GoldenPath hg38 (UCSC)FBP1  -     chr9:94603139-94640263 -  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBP1  -     9q22.32   [Description]    (hg19-Feb_2009)
GoldenPathFBP1 - 9q22.32 [CytoView hg19]  FBP1 - 9q22.32 [CytoView hg38]
ImmunoBaseENSG00000165140
genome Data Viewer NCBIFBP1 [Mapview hg19]  
OMIM229700   611570   
Gene and transcription
Genbank (Entrez)AF073475 AK223395 AK292199 AK316583 AY544122
RefSeq transcript (Entrez)NM_000507 NM_001127628
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBP1
Alternative Splicing GalleryENSG00000165140
Gene ExpressionFBP1 [ NCBI-GEO ]   FBP1 [ EBI - ARRAY_EXPRESS ]   FBP1 [ SEEK ]   FBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)FBP1 [ Firebrowse - Broad ]
GenevisibleExpression of FBP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2203
GTEX Portal (Tissue expression)FBP1
Human Protein AtlasENSG00000165140-FBP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09467   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09467  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09467
Splice isoforms : SwissVarP09467
PhosPhoSitePlusP09467
Domaine pattern : Prosite (Expaxy)FBPASE (PS00124)   
Domains : Interpro (EBI)FBPase_class-1    FBPase_N    FBPtase    Fructose_bisphosphatase_AS   
Domain families : Pfam (Sanger)FBPase (PF00316)   
Domain families : Pfam (NCBI)pfam00316   
Conserved Domain (NCBI)FBP1
DMDM Disease mutations2203
Blocks (Seattle)FBP1
PDB (RSDB)1FTA    2FHY    2FIE    2FIX    2JJK    2VT5    2WBB    2WBD    2Y5K    2Y5L    3A29    3KBZ    3KC0    3KC1    4MJO    5LDZ    5PZQ    5PZR    5PZS    5PZT    5PZU    5PZV    5PZW    5PZX    5PZY    5PZZ    5Q00    5Q01    5Q02    5Q03    5Q04    5Q05    5Q06    5Q07    5Q08    5Q09    5Q0A    5Q0B   
PDB Europe1FTA    2FHY    2FIE    2FIX    2JJK    2VT5    2WBB    2WBD    2Y5K    2Y5L    3A29    3KBZ    3KC0    3KC1    4MJO    5LDZ    5PZQ    5PZR    5PZS    5PZT    5PZU    5PZV    5PZW    5PZX    5PZY    5PZZ    5Q00    5Q01    5Q02    5Q03    5Q04    5Q05    5Q06    5Q07    5Q08    5Q09    5Q0A    5Q0B   
PDB (PDBSum)1FTA    2FHY    2FIE    2FIX    2JJK    2VT5    2WBB    2WBD    2Y5K    2Y5L    3A29    3KBZ    3KC0    3KC1    4MJO    5LDZ    5PZQ    5PZR    5PZS    5PZT    5PZU    5PZV    5PZW    5PZX    5PZY    5PZZ    5Q00    5Q01    5Q02    5Q03    5Q04    5Q05    5Q06    5Q07    5Q08    5Q09    5Q0A    5Q0B   
PDB (IMB)1FTA    2FHY    2FIE    2FIX    2JJK    2VT5    2WBB    2WBD    2Y5K    2Y5L    3A29    3KBZ    3KC0    3KC1    4MJO    5LDZ    5PZQ    5PZR    5PZS    5PZT    5PZU    5PZV    5PZW    5PZX    5PZY    5PZZ    5Q00    5Q01    5Q02    5Q03    5Q04    5Q05    5Q06    5Q07    5Q08    5Q09    5Q0A    5Q0B   
Structural Biology KnowledgeBase1FTA    2FHY    2FIE    2FIX    2JJK    2VT5    2WBB    2WBD    2Y5K    2Y5L    3A29    3KBZ    3KC0    3KC1    4MJO    5LDZ    5PZQ    5PZR    5PZS    5PZT    5PZU    5PZV    5PZW    5PZX    5PZY    5PZZ    5Q00    5Q01    5Q02    5Q03    5Q04    5Q05    5Q06    5Q07    5Q08    5Q09    5Q0A    5Q0B   
SCOP (Structural Classification of Proteins)1FTA    2FHY    2FIE    2FIX    2JJK    2VT5    2WBB    2WBD    2Y5K    2Y5L    3A29    3KBZ    3KC0    3KC1    4MJO    5LDZ    5PZQ    5PZR    5PZS    5PZT    5PZU    5PZV    5PZW    5PZX    5PZY    5PZZ    5Q00    5Q01    5Q02    5Q03    5Q04    5Q05    5Q06    5Q07    5Q08    5Q09    5Q0A    5Q0B   
CATH (Classification of proteins structures)1FTA    2FHY    2FIE    2FIX    2JJK    2VT5    2WBB    2WBD    2Y5K    2Y5L    3A29    3KBZ    3KC0    3KC1    4MJO    5LDZ    5PZQ    5PZR    5PZS    5PZT    5PZU    5PZV    5PZW    5PZX    5PZY    5PZZ    5Q00    5Q01    5Q02    5Q03    5Q04    5Q05    5Q06    5Q07    5Q08    5Q09    5Q0A    5Q0B   
SuperfamilyP09467
Human Protein Atlas [tissue]ENSG00000165140-FBP1 [tissue]
Peptide AtlasP09467
HPRD01973
IPIIPI00073772   IPI00644994   
Protein Interaction databases
DIP (DOE-UCLA)P09467
IntAct (EBI)P09467
FunCoupENSG00000165140
BioGRIDFBP1
STRING (EMBL)FBP1
ZODIACFBP1
Ontologies - Pathways
QuickGOP09467
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II transcription factor binding  protein binding  nucleus  cytoplasm  cytoplasm  cytosol  cytosol  cytosol  sucrose biosynthetic process  fructose metabolic process  fructose 6-phosphate metabolic process  fructose 6-phosphate metabolic process  gluconeogenesis  gluconeogenesis  gluconeogenesis  gluconeogenesis  gluconeogenesis  regulation of gluconeogenesis  AMP binding  dephosphorylation  dephosphorylation  negative regulation of cell growth  fructose 1,6-bisphosphate metabolic process  cellular response to drug  fructose 1,6-bisphosphate 1-phosphatase activity  fructose 1,6-bisphosphate 1-phosphatase activity  fructose 1,6-bisphosphate 1-phosphatase activity  identical protein binding  negative regulation of glycolytic process  negative regulation of glycolytic process  negative regulation of Ras protein signal transduction  metal ion binding  monosaccharide binding  extracellular exosome  cellular response to magnesium ion  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II transcription factor binding  protein binding  nucleus  cytoplasm  cytoplasm  cytosol  cytosol  cytosol  sucrose biosynthetic process  fructose metabolic process  fructose 6-phosphate metabolic process  fructose 6-phosphate metabolic process  gluconeogenesis  gluconeogenesis  gluconeogenesis  gluconeogenesis  gluconeogenesis  regulation of gluconeogenesis  AMP binding  dephosphorylation  dephosphorylation  negative regulation of cell growth  fructose 1,6-bisphosphate metabolic process  cellular response to drug  fructose 1,6-bisphosphate 1-phosphatase activity  fructose 1,6-bisphosphate 1-phosphatase activity  fructose 1,6-bisphosphate 1-phosphatase activity  identical protein binding  negative regulation of glycolytic process  negative regulation of glycolytic process  negative regulation of Ras protein signal transduction  metal ion binding  monosaccharide binding  extracellular exosome  cellular response to magnesium ion  
Pathways : KEGGGlycolysis / Gluconeogenesis    Pentose phosphate pathway    Fructose and mannose metabolism    Insulin signaling pathway   
NDEx NetworkFBP1
Atlas of Cancer Signalling NetworkFBP1
Wikipedia pathwaysFBP1
Orthology - Evolution
OrthoDB2203
GeneTree (enSembl)ENSG00000165140
Phylogenetic Trees/Animal Genes : TreeFamFBP1
HOGENOMP09467
Homologs : HomoloGeneFBP1
Homology/Alignments : Family Browser (UCSC)FBP1
Gene fusions - Rearrangements
Fusion : QuiverFBP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBP1
dbVarFBP1
ClinVarFBP1
1000_GenomesFBP1 
Exome Variant ServerFBP1
GNOMAD BrowserENSG00000165140
Varsome BrowserFBP1
Genetic variants : HAPMAP2203
Genomic Variants (DGV)FBP1 [DGVbeta]
DECIPHERFBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBP1 
Mutations
ICGC Data PortalFBP1 
TCGA Data PortalFBP1 
Broad Tumor PortalFBP1
OASIS PortalFBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFBP1
Mutations and Diseases : HGMDFBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch FBP1
DgiDB (Drug Gene Interaction Database)FBP1
DoCM (Curated mutations)FBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBP1 (select a term)
intoGenFBP1
Cancer3DFBP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM229700    611570   
Orphanet676   
DisGeNETFBP1
MedgenFBP1
Genetic Testing Registry FBP1
NextProtP09467 [Medical]
TSGene2203
GENETestsFBP1
Target ValidationFBP1
Huge Navigator FBP1 [HugePedia]
snp3D : Map Gene to Disease2203
BioCentury BCIQFBP1
ClinGenFBP1
Clinical trials, drugs, therapy
Protein Interactions : CTD2203
Pharm GKB GenePA28018
Clinical trialFBP1
Miscellaneous
canSAR (ICR)FBP1 (select the gene name)
HarmonizomeFBP1
DataMed IndexFBP1
Probes
Litterature
PubMed105 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBP1
EVEXFBP1
GoPubMedFBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:13:02 CEST 2020

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