Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FBRSL1 (fibrosin like 1)

Identity

Alias_namesfibrosin-like 1
Alias_symbol (synonym)KIAA1545
Other alias-
HGNC (Hugo) FBRSL1
LocusID (NCBI) 57666
Atlas_Id 63311
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132490571 and ends at 132585187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARFGAP2 (11p11.2) / FBRSL1 (12q24.33)ERCC1 (19q13.32) / FBRSL1 (12q24.33)FBRSL1 (12q24.33) / CKAP4 (12q23.3)
FBRSL1 (12q24.33) / COL9A2 (1p34.2)FBRSL1 (12q24.33) / EP400 (12q24.33)FBRSL1 (12q24.33) / FAT1 (4q35.2)
FBRSL1 (12q24.33) / GALNT9 (12q24.33)FBRSL1 (12q24.33) / GNAO1 (16q12.2)FBRSL1 (12q24.33) / LIPF (10q23.31)
FBRSL1 (12q24.33) / MARS (12q13.3)FBRSL1 (12q24.33) / RBM42 (19q13.12)FBRSL1 (12q24.33) / STX2 (12q24.33)
FBRSL1 (12q24.33) / ZMPSTE24 (1p34.2)NOC4L (12q24.33) / FBRSL1 (12q24.33)FBRSL1 CKAP4
FBRSL1 GALNT9

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBRSL1   29308
Cards
Entrez_Gene (NCBI)FBRSL1  57666  fibrosin like 1
Aliases
GeneCards (Weizmann)FBRSL1
Ensembl hg19 (Hinxton)ENSG00000112787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112787 [Gene_View]  chr12:132490571-132585187 [Contig_View]  FBRSL1 [Vega]
ICGC DataPortalENSG00000112787
TCGA cBioPortalFBRSL1
AceView (NCBI)FBRSL1
Genatlas (Paris)FBRSL1
WikiGenes57666
SOURCE (Princeton)FBRSL1
Genetics Home Reference (NIH)FBRSL1
Genomic and cartography
GoldenPath hg38 (UCSC)FBRSL1  -     chr12:132490571-132585187 +  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBRSL1  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblFBRSL1 - 12q24.33 [CytoView hg19]  FBRSL1 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIFBRSL1 [Mapview hg19]  FBRSL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB046765 AF490258 BC008052 BC013284 BC034807
RefSeq transcript (Entrez)NM_001142641
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBRSL1
Cluster EST : UnigeneHs.661809 [ NCBI ]
CGAP (NCI)Hs.661809
Alternative Splicing GalleryENSG00000112787
Gene ExpressionFBRSL1 [ NCBI-GEO ]   FBRSL1 [ EBI - ARRAY_EXPRESS ]   FBRSL1 [ SEEK ]   FBRSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)FBRSL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57666
GTEX Portal (Tissue expression)FBRSL1
Human Protein AtlasENSG00000112787-FBRSL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCM7
Splice isoforms : SwissVarQ9HCM7
PhosPhoSitePlusQ9HCM7
Domains : Interpro (EBI)AUTS2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FBRSL1
DMDM Disease mutations57666
Blocks (Seattle)FBRSL1
SuperfamilyQ9HCM7
Human Protein Atlas [tissue]ENSG00000112787-FBRSL1 [tissue]
Peptide AtlasQ9HCM7
IPIIPI00941159   IPI00411412   IPI00973550   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCM7
IntAct (EBI)Q9HCM7
FunCoupENSG00000112787
BioGRIDFBRSL1
STRING (EMBL)FBRSL1
ZODIACFBRSL1
Ontologies - Pathways
QuickGOQ9HCM7
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkFBRSL1
Atlas of Cancer Signalling NetworkFBRSL1
Wikipedia pathwaysFBRSL1
Orthology - Evolution
OrthoDB57666
GeneTree (enSembl)ENSG00000112787
Phylogenetic Trees/Animal Genes : TreeFamFBRSL1
HOVERGENQ9HCM7
HOGENOMQ9HCM7
Homologs : HomoloGeneFBRSL1
Homology/Alignments : Family Browser (UCSC)FBRSL1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCFBRSL1 CKAP4
Fusion: TCGA_MDACCFBRSL1 GALNT9
Tumor Fusion PortalFBRSL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBRSL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBRSL1
dbVarFBRSL1
ClinVarFBRSL1
1000_GenomesFBRSL1 
Exome Variant ServerFBRSL1
ExAC (Exome Aggregation Consortium)ENSG00000112787
GNOMAD BrowserENSG00000112787
Genetic variants : HAPMAP57666
Genomic Variants (DGV)FBRSL1 [DGVbeta]
DECIPHERFBRSL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBRSL1 
Mutations
ICGC Data PortalFBRSL1 
TCGA Data PortalFBRSL1 
Broad Tumor PortalFBRSL1
OASIS PortalFBRSL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBRSL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBRSL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBRSL1
DgiDB (Drug Gene Interaction Database)FBRSL1
DoCM (Curated mutations)FBRSL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBRSL1 (select a term)
intoGenFBRSL1
Cancer3DFBRSL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFBRSL1
MedgenFBRSL1
Genetic Testing Registry FBRSL1
NextProtQ9HCM7 [Medical]
TSGene57666
GENETestsFBRSL1
Target ValidationFBRSL1
Huge Navigator FBRSL1 [HugePedia]
snp3D : Map Gene to Disease57666
BioCentury BCIQFBRSL1
ClinGenFBRSL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57666
Chemical/Pharm GKB GenePA164720011
Clinical trialFBRSL1
Miscellaneous
canSAR (ICR)FBRSL1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBRSL1
EVEXFBRSL1
GoPubMedFBRSL1
iHOPFBRSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:09 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.