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FBXL16 (F-box and leucine rich repeat protein 16)

Identity

Alias_namesC16orf22
chromosome 16 open reading frame 22
Alias_symbol (synonym)MGC33974
Fbl16
Other aliasc380A1.1
HGNC (Hugo) FBXL16
LocusID (NCBI) 146330
Atlas_Id 63314
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 692500 and ends at 705825 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXL16   14150
Cards
Entrez_Gene (NCBI)FBXL16  146330  F-box and leucine rich repeat protein 16
AliasesC16orf22; Fbl16; c380A1.1
GeneCards (Weizmann)FBXL16
Ensembl hg19 (Hinxton)ENSG00000127585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127585 [Gene_View]  chr16:692500-705825 [Contig_View]  FBXL16 [Vega]
ICGC DataPortalENSG00000127585
TCGA cBioPortalFBXL16
AceView (NCBI)FBXL16
Genatlas (Paris)FBXL16
WikiGenes146330
SOURCE (Princeton)FBXL16
Genetics Home Reference (NIH)FBXL16
Genomic and cartography
GoldenPath hg38 (UCSC)FBXL16  -     chr16:692500-705825 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXL16  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblFBXL16 - 16p13.3 [CytoView hg19]  FBXL16 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIFBXL16 [Mapview hg19]  FBXL16 [Mapview hg38]
OMIM609082   
Gene and transcription
Genbank (Entrez)AK091054 BC034014 BC036680 GQ129419 GQ129420
RefSeq transcript (Entrez)NM_153350
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXL16
Cluster EST : UnigeneHs.513244 [ NCBI ]
CGAP (NCI)Hs.513244
Alternative Splicing GalleryENSG00000127585
Gene ExpressionFBXL16 [ NCBI-GEO ]   FBXL16 [ EBI - ARRAY_EXPRESS ]   FBXL16 [ SEEK ]   FBXL16 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXL16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146330
GTEX Portal (Tissue expression)FBXL16
Human Protein AtlasENSG00000127585-FBXL16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N461   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N461  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N461
Splice isoforms : SwissVarQ8N461
PhosPhoSitePlusQ8N461
Domains : Interpro (EBI)F-box_dom    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_Cys-con_subtyp   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Domain families : Smart (EMBL)LRR_CC (SM00367)  
Conserved Domain (NCBI)FBXL16
DMDM Disease mutations146330
Blocks (Seattle)FBXL16
SuperfamilyQ8N461
Human Protein Atlas [tissue]ENSG00000127585-FBXL16 [tissue]
Peptide AtlasQ8N461
HPRD12365
IPIIPI00181733   
Protein Interaction databases
DIP (DOE-UCLA)Q8N461
IntAct (EBI)Q8N461
FunCoupENSG00000127585
BioGRIDFBXL16
STRING (EMBL)FBXL16
ZODIACFBXL16
Ontologies - Pathways
QuickGOQ8N461
Ontology : AmiGOprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytosol  
Ontology : EGO-EBIprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytosol  
NDEx NetworkFBXL16
Atlas of Cancer Signalling NetworkFBXL16
Wikipedia pathwaysFBXL16
Orthology - Evolution
OrthoDB146330
GeneTree (enSembl)ENSG00000127585
Phylogenetic Trees/Animal Genes : TreeFamFBXL16
HOVERGENQ8N461
HOGENOMQ8N461
Homologs : HomoloGeneFBXL16
Homology/Alignments : Family Browser (UCSC)FBXL16
Gene fusions - Rearrangements
Fusion: Tumor Portal FBXL16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXL16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXL16
dbVarFBXL16
ClinVarFBXL16
1000_GenomesFBXL16 
Exome Variant ServerFBXL16
ExAC (Exome Aggregation Consortium)ENSG00000127585
GNOMAD BrowserENSG00000127585
Genetic variants : HAPMAP146330
Genomic Variants (DGV)FBXL16 [DGVbeta]
DECIPHERFBXL16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXL16 
Mutations
ICGC Data PortalFBXL16 
TCGA Data PortalFBXL16 
Broad Tumor PortalFBXL16
OASIS PortalFBXL16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXL16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXL16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXL16
DgiDB (Drug Gene Interaction Database)FBXL16
DoCM (Curated mutations)FBXL16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXL16 (select a term)
intoGenFBXL16
Cancer3DFBXL16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609082   
Orphanet
MedgenFBXL16
Genetic Testing Registry FBXL16
NextProtQ8N461 [Medical]
TSGene146330
GENETestsFBXL16
Target ValidationFBXL16
Huge Navigator FBXL16 [HugePedia]
snp3D : Map Gene to Disease146330
BioCentury BCIQFBXL16
ClinGenFBXL16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146330
Chemical/Pharm GKB GenePA25536
Clinical trialFBXL16
Miscellaneous
canSAR (ICR)FBXL16 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXL16
EVEXFBXL16
GoPubMedFBXL16
iHOPFBXL16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:47:33 CET 2017

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