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FBXL17 (F-box and leucine rich repeat protein 17)

Identity

Alias_namesFBXO13
F-box only protein 13
Alias_symbol (synonym)DKFZP434C1715
Fbx13
Fbl17
Other alias
HGNC (Hugo) FBXL17
LocusID (NCBI) 64839
Atlas_Id 50499
Location 5q21.3  [Link to chromosome band 5q21]
Location_base_pair Starts at 107859033 and ends at 108382098 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AHNAK (11q12.3) / FBXL17 (5q21.3)BHLHE40 (3p26.1) / FBXL17 (5q21.3)CLN6 (15q23) / FBXL17 (5q21.3)
EFNA5 (5q21.3) / FBXL17 (5q21.3)FBXL17 (5q21.3) / AHNAK (11q12.3)FMNL2 (2q23.3) / FBXL17 (5q21.3)
CLN6 15q23 / FBXL17 5q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXL17   13615
Cards
Entrez_Gene (NCBI)FBXL17  64839  F-box and leucine rich repeat protein 17
AliasesFBXO13; Fbl17; Fbx13
GeneCards (Weizmann)FBXL17
Ensembl hg19 (Hinxton)ENSG00000145743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145743 [Gene_View]  chr5:107859033-108382098 [Contig_View]  FBXL17 [Vega]
ICGC DataPortalENSG00000145743
TCGA cBioPortalFBXL17
AceView (NCBI)FBXL17
Genatlas (Paris)FBXL17
WikiGenes64839
SOURCE (Princeton)FBXL17
Genetics Home Reference (NIH)FBXL17
Genomic and cartography
GoldenPath hg38 (UCSC)FBXL17  -     chr5:107859033-108382098 -  5q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXL17  -     5q21.3   [Description]    (hg19-Feb_2009)
EnsemblFBXL17 - 5q21.3 [CytoView hg19]  FBXL17 - 5q21.3 [CytoView hg38]
Mapping of homologs : NCBIFBXL17 [Mapview hg19]  FBXL17 [Mapview hg38]
OMIM609083   
Gene and transcription
Genbank (Entrez)AA988642 AB533280 AI826672 AK126722 AK172822
RefSeq transcript (Entrez)NM_001163315 NM_022824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXL17
Cluster EST : UnigeneHs.657225 [ NCBI ]
CGAP (NCI)Hs.657225
Alternative Splicing GalleryENSG00000145743
Gene ExpressionFBXL17 [ NCBI-GEO ]   FBXL17 [ EBI - ARRAY_EXPRESS ]   FBXL17 [ SEEK ]   FBXL17 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXL17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64839
GTEX Portal (Tissue expression)FBXL17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UF56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UF56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UF56
Splice isoforms : SwissVarQ9UF56
PhosPhoSitePlusQ9UF56
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_Cys-con_subtyp   
Domain families : Pfam (Sanger)F-box-like (PF12937)    LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam12937    pfam13516   
Domain families : Smart (EMBL)FBOX (SM00256)  LRR_CC (SM00367)  
Conserved Domain (NCBI)FBXL17
DMDM Disease mutations64839
Blocks (Seattle)FBXL17
SuperfamilyQ9UF56
Human Protein AtlasENSG00000145743
Peptide AtlasQ9UF56
HPRD10950
IPIIPI00004341   IPI00902721   IPI00784190   
Protein Interaction databases
DIP (DOE-UCLA)Q9UF56
IntAct (EBI)Q9UF56
FunCoupENSG00000145743
BioGRIDFBXL17
STRING (EMBL)FBXL17
ZODIACFBXL17
Ontologies - Pathways
QuickGOQ9UF56
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFBXL17
Atlas of Cancer Signalling NetworkFBXL17
Wikipedia pathwaysFBXL17
Orthology - Evolution
OrthoDB64839
GeneTree (enSembl)ENSG00000145743
Phylogenetic Trees/Animal Genes : TreeFamFBXL17
HOVERGENQ9UF56
HOGENOMQ9UF56
Homologs : HomoloGeneFBXL17
Homology/Alignments : Family Browser (UCSC)FBXL17
Gene fusions - Rearrangements
Fusion : MitelmanCLN6/FBXL17 [15q23/5q21.3]  [t(5;15)(q21;q23)]  
Fusion: TCGACLN6 15q23 FBXL17 5q21.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXL17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXL17
dbVarFBXL17
ClinVarFBXL17
1000_GenomesFBXL17 
Exome Variant ServerFBXL17
ExAC (Exome Aggregation Consortium)FBXL17 (select the gene name)
Genetic variants : HAPMAP64839
Genomic Variants (DGV)FBXL17 [DGVbeta]
DECIPHERFBXL17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXL17 
Mutations
ICGC Data PortalFBXL17 
TCGA Data PortalFBXL17 
Broad Tumor PortalFBXL17
OASIS PortalFBXL17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXL17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXL17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXL17
DgiDB (Drug Gene Interaction Database)FBXL17
DoCM (Curated mutations)FBXL17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXL17 (select a term)
intoGenFBXL17
Cancer3DFBXL17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609083   
Orphanet
MedgenFBXL17
Genetic Testing Registry FBXL17
NextProtQ9UF56 [Medical]
TSGene64839
GENETestsFBXL17
Huge Navigator FBXL17 [HugePedia]
snp3D : Map Gene to Disease64839
BioCentury BCIQFBXL17
ClinGenFBXL17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64839
Chemical/Pharm GKB GenePA134920563
Clinical trialFBXL17
Miscellaneous
canSAR (ICR)FBXL17 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXL17
EVEXFBXL17
GoPubMedFBXL17
iHOPFBXL17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:37 CEST 2017

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