Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FBXL19 (F-box and leucine-rich repeat protein 19)

Identity

Alias_symbol (synonym)DKFZp434K0410
Fbl19
JHDM1C
CXXC11
Other alias
HGNC (Hugo) FBXL19
LocusID (NCBI) 54620
Atlas_Id 63315
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30935896 and ends at 30960104 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BSG (19p13.3) / FBXL19 (16p11.2)FBXL19 (16p11.2) / FBXL19 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXL19   25300
Cards
Entrez_Gene (NCBI)FBXL19  54620  F-box and leucine-rich repeat protein 19
AliasesCXXC11; Fbl19; JHDM1C
GeneCards (Weizmann)FBXL19
Ensembl hg19 (Hinxton)ENSG00000099364 [Gene_View]  chr16:30935896-30960104 [Contig_View]  FBXL19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000099364 [Gene_View]  chr16:30935896-30960104 [Contig_View]  FBXL19 [Vega]
ICGC DataPortalENSG00000099364
TCGA cBioPortalFBXL19
AceView (NCBI)FBXL19
Genatlas (Paris)FBXL19
WikiGenes54620
SOURCE (Princeton)FBXL19
Genetics Home Reference (NIH)FBXL19
Genomic and cartography
GoldenPath hg19 (UCSC)FBXL19  -     chr16:30935896-30960104 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXL19  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblFBXL19 - 16p11.2 [CytoView hg19]  FBXL19 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIFBXL19 [Mapview hg19]  FBXL19 [Mapview hg38]
OMIM609085   
Gene and transcription
Genbank (Entrez)AK098777 AK127701 AK302669 AL137589 BC032391
RefSeq transcript (Entrez)NM_001099784 NM_001271651 NM_001282351 NM_019085
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)FBXL19
Cluster EST : UnigeneHs.152149 [ NCBI ]
CGAP (NCI)Hs.152149
Alternative Splicing GalleryENSG00000099364
Gene ExpressionFBXL19 [ NCBI-GEO ]   FBXL19 [ EBI - ARRAY_EXPRESS ]   FBXL19 [ SEEK ]   FBXL19 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXL19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54620
GTEX Portal (Tissue expression)FBXL19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PCT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PCT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PCT2
Splice isoforms : SwissVarQ6PCT2
PhosPhoSitePlusQ6PCT2
Domaine pattern : Prosite (Expaxy)ZF_CXXC (PS51058)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)F-box_dom    Zinc_finger_PHD-type_CS    Znf_CXXC    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)F-box (PF00646)    zf-CXXC (PF02008)   
Domain families : Pfam (NCBI)pfam00646    pfam02008   
Domain families : Smart (EMBL)FBOX (SM00256)  PHD (SM00249)  
Conserved Domain (NCBI)FBXL19
DMDM Disease mutations54620
Blocks (Seattle)FBXL19
SuperfamilyQ6PCT2
Human Protein AtlasENSG00000099364
Peptide AtlasQ6PCT2
HPRD12366
IPIIPI00554494   IPI00415044   IPI00974004   
Protein Interaction databases
DIP (DOE-UCLA)Q6PCT2
IntAct (EBI)Q6PCT2
FunCoupENSG00000099364
BioGRIDFBXL19
STRING (EMBL)FBXL19
ZODIACFBXL19
Ontologies - Pathways
QuickGOQ6PCT2
Ontology : AmiGODNA binding  protein binding  zinc ion binding  SCF ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIDNA binding  protein binding  zinc ion binding  SCF ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkFBXL19
Atlas of Cancer Signalling NetworkFBXL19
Wikipedia pathwaysFBXL19
Orthology - Evolution
OrthoDB54620
GeneTree (enSembl)ENSG00000099364
Phylogenetic Trees/Animal Genes : TreeFamFBXL19
HOVERGENQ6PCT2
HOGENOMQ6PCT2
Homologs : HomoloGeneFBXL19
Homology/Alignments : Family Browser (UCSC)FBXL19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXL19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXL19
dbVarFBXL19
ClinVarFBXL19
1000_GenomesFBXL19 
Exome Variant ServerFBXL19
ExAC (Exome Aggregation Consortium)FBXL19 (select the gene name)
Genetic variants : HAPMAP54620
Genomic Variants (DGV)FBXL19 [DGVbeta]
DECIPHER (Syndromes)16:30935896-30960104  ENSG00000099364
CONAN: Copy Number AnalysisFBXL19 
Mutations
ICGC Data PortalFBXL19 
TCGA Data PortalFBXL19 
Broad Tumor PortalFBXL19
OASIS PortalFBXL19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXL19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXL19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXL19
DgiDB (Drug Gene Interaction Database)FBXL19
DoCM (Curated mutations)FBXL19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXL19 (select a term)
intoGenFBXL19
Cancer3DFBXL19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609085   
Orphanet
MedgenFBXL19
Genetic Testing Registry FBXL19
NextProtQ6PCT2 [Medical]
TSGene54620
GENETestsFBXL19
Huge Navigator FBXL19 [HugePedia]
snp3D : Map Gene to Disease54620
BioCentury BCIQFBXL19
ClinGenFBXL19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54620
Chemical/Pharm GKB GenePA134911396
Clinical trialFBXL19
Miscellaneous
canSAR (ICR)FBXL19 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXL19
EVEXFBXL19
GoPubMedFBXL19
iHOPFBXL19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:34 CET 2017

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