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FBXL21 (F-box and leucine-rich repeat protein 21 (gene/pseudogene))

Identity

Alias_namesFBXL3B
FBXL3P
F-box and leucine-rich repeat protein 3 pseudogene
F-box and leucine-rich repeat protein 21
F-box and leucine-rich repeat protein 21 (gene/pseudogene)
Alias_symbol (synonym)FBL3B
Fbl21
Other alias
HGNC (Hugo) FBXL21
LocusID (NCBI) 26223
Atlas_Id 47122
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135266006 and ends at 135277367 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXL21   13600
Cards
Entrez_Gene (NCBI)FBXL21  26223  F-box and leucine-rich repeat protein 21 (gene/pseudogene)
AliasesFBL3B; FBXL3B; FBXL3P; Fbl21
GeneCards (Weizmann)FBXL21
Ensembl hg19 (Hinxton) [Gene_View]  chr5:135266006-135277367 [Contig_View]  FBXL21 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:135266006-135277367 [Contig_View]  FBXL21 [Vega]
TCGA cBioPortalFBXL21
AceView (NCBI)FBXL21
Genatlas (Paris)FBXL21
WikiGenes26223
SOURCE (Princeton)FBXL21
Genetics Home Reference (NIH)FBXL21
Genomic and cartography
GoldenPath hg19 (UCSC)FBXL21  -     chr5:135266006-135277367 +  5q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXL21  -     5q31.1   [Description]    (hg38-Dec_2013)
EnsemblFBXL21 - 5q31.1 [CytoView hg19]  FBXL21 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIFBXL21 [Mapview hg19]  FBXL21 [Mapview hg38]
OMIM609087   
Gene and transcription
Genbank (Entrez)AF129533 BC044938 BC106753 DA633926 DN994517
RefSeq transcript (Entrez)NM_012159
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)FBXL21
Cluster EST : UnigeneHs.591275 [ NCBI ]
CGAP (NCI)Hs.591275
Gene ExpressionFBXL21 [ NCBI-GEO ]   FBXL21 [ EBI - ARRAY_EXPRESS ]   FBXL21 [ SEEK ]   FBXL21 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXL21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26223
GTEX Portal (Tissue expression)FBXL21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKT6
Splice isoforms : SwissVarQ9UKT6
PhosPhoSitePlusQ9UKT6
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom    L_dom-like   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXL21
DMDM Disease mutations26223
Blocks (Seattle)FBXL21
SuperfamilyQ9UKT6
Peptide AtlasQ9UKT6
HPRD16431
IPIIPI00007775   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKT6
IntAct (EBI)Q9UKT6
BioGRIDFBXL21
STRING (EMBL)FBXL21
ZODIACFBXL21
Ontologies - Pathways
QuickGOQ9UKT6
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  nucleus  cytosol  protein ubiquitination  protein ubiquitination  protein ubiquitination  SCF ubiquitin ligase complex  entrainment of circadian clock by photoperiod  rhythmic process  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  nucleus  cytosol  protein ubiquitination  protein ubiquitination  protein ubiquitination  SCF ubiquitin ligase complex  entrainment of circadian clock by photoperiod  rhythmic process  
NDEx NetworkFBXL21
Atlas of Cancer Signalling NetworkFBXL21
Wikipedia pathwaysFBXL21
Orthology - Evolution
OrthoDB26223
Phylogenetic Trees/Animal Genes : TreeFamFBXL21
HOVERGENQ9UKT6
HOGENOMQ9UKT6
Homologs : HomoloGeneFBXL21
Homology/Alignments : Family Browser (UCSC)FBXL21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXL21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXL21
dbVarFBXL21
ClinVarFBXL21
1000_GenomesFBXL21 
Exome Variant ServerFBXL21
ExAC (Exome Aggregation Consortium)FBXL21 (select the gene name)
Genetic variants : HAPMAP26223
Genomic Variants (DGV)FBXL21 [DGVbeta]
DECIPHER (Syndromes)5:135266006-135277367  
CONAN: Copy Number AnalysisFBXL21 
Mutations
ICGC Data PortalFBXL21 
TCGA Data PortalFBXL21 
Broad Tumor PortalFBXL21
OASIS PortalFBXL21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXL21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXL21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXL21
DgiDB (Drug Gene Interaction Database)FBXL21
DoCM (Curated mutations)FBXL21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXL21 (select a term)
intoGenFBXL21
Cancer3DFBXL21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609087   
Orphanet
MedgenFBXL21
Genetic Testing Registry FBXL21
NextProtQ9UKT6 [Medical]
TSGene26223
GENETestsFBXL21
Huge Navigator FBXL21 [HugePedia]
snp3D : Map Gene to Disease26223
BioCentury BCIQFBXL21
ClinGenFBXL21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26223
Chemical/Pharm GKB GenePA28023
Clinical trialFBXL21
Miscellaneous
canSAR (ICR)FBXL21 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXL21
EVEXFBXL21
GoPubMedFBXL21
iHOPFBXL21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:56 CEST 2017

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