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FBXO10 (F-box protein 10)

Identity

Alias_namesF-box only protein 10
Alias_symbol (synonym)FBX10
Other aliasPRMT11
HGNC (Hugo) FBXO10
LocusID (NCBI) 26267
Atlas_Id 53297
Location 9p13.2  [Link to chromosome band 9p13]
Location_base_pair Starts at 37510889 and ends at 37576250 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBXO10 (9p13.2) / NF2 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO10   13589
Cards
Entrez_Gene (NCBI)FBXO10  26267  F-box protein 10
AliasesFBX10; PRMT11
GeneCards (Weizmann)FBXO10
Ensembl hg19 (Hinxton)ENSG00000147912 [Gene_View]  chr9:37510889-37576250 [Contig_View]  FBXO10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147912 [Gene_View]  chr9:37510889-37576250 [Contig_View]  FBXO10 [Vega]
ICGC DataPortalENSG00000147912
TCGA cBioPortalFBXO10
AceView (NCBI)FBXO10
Genatlas (Paris)FBXO10
WikiGenes26267
SOURCE (Princeton)FBXO10
Genetics Home Reference (NIH)FBXO10
Genomic and cartography
GoldenPath hg19 (UCSC)FBXO10  -     chr9:37510889-37576250 -  9p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXO10  -     9p13.2   [Description]    (hg38-Dec_2013)
EnsemblFBXO10 - 9p13.2 [CytoView hg19]  FBXO10 - 9p13.2 [CytoView hg38]
Mapping of homologs : NCBIFBXO10 [Mapview hg19]  FBXO10 [Mapview hg38]
OMIM609092   
Gene and transcription
Genbank (Entrez)AB209610 AF174598 AF176705 AI475671 AK123986
RefSeq transcript (Entrez)NM_012166
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)FBXO10
Cluster EST : UnigeneHs.709527 [ NCBI ]
CGAP (NCI)Hs.709527
Alternative Splicing GalleryENSG00000147912
Gene ExpressionFBXO10 [ NCBI-GEO ]   FBXO10 [ EBI - ARRAY_EXPRESS ]   FBXO10 [ SEEK ]   FBXO10 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26267
GTEX Portal (Tissue expression)FBXO10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK96
Splice isoforms : SwissVarQ9UK96
PhosPhoSitePlusQ9UK96
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)Carb-bd_sugar_hydrolysis-dom    F-box_dom    NosD_dom    Para_beta_helix_rpt-2    PbH1    Pectin_lyas_fold    Pectin_lyase_fold/virulence   
Domain families : Pfam (Sanger)F-box-like (PF12937)    NosD (PF05048)   
Domain families : Pfam (NCBI)pfam12937    pfam05048   
Domain families : Smart (EMBL)CASH (SM00722)  FBOX (SM00256)  PbH1 (SM00710)  
Conserved Domain (NCBI)FBXO10
DMDM Disease mutations26267
Blocks (Seattle)FBXO10
SuperfamilyQ9UK96
Human Protein AtlasENSG00000147912
Peptide AtlasQ9UK96
IPIIPI01009254   IPI00552091   IPI00939638   IPI01010972   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK96
IntAct (EBI)Q9UK96
FunCoupENSG00000147912
BioGRIDFBXO10
STRING (EMBL)FBXO10
ZODIACFBXO10
Ontologies - Pathways
QuickGOQ9UK96
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  protein binding  cytoplasm  apoptotic process  protein ubiquitination  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  regulation of apoptotic process  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  protein binding  cytoplasm  apoptotic process  protein ubiquitination  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  regulation of apoptotic process  
NDEx NetworkFBXO10
Atlas of Cancer Signalling NetworkFBXO10
Wikipedia pathwaysFBXO10
Orthology - Evolution
OrthoDB26267
GeneTree (enSembl)ENSG00000147912
Phylogenetic Trees/Animal Genes : TreeFamFBXO10
HOVERGENQ9UK96
HOGENOMQ9UK96
Homologs : HomoloGeneFBXO10
Homology/Alignments : Family Browser (UCSC)FBXO10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO10
dbVarFBXO10
ClinVarFBXO10
1000_GenomesFBXO10 
Exome Variant ServerFBXO10
ExAC (Exome Aggregation Consortium)FBXO10 (select the gene name)
Genetic variants : HAPMAP26267
Genomic Variants (DGV)FBXO10 [DGVbeta]
DECIPHER (Syndromes)9:37510889-37576250  ENSG00000147912
CONAN: Copy Number AnalysisFBXO10 
Mutations
ICGC Data PortalFBXO10 
TCGA Data PortalFBXO10 
Broad Tumor PortalFBXO10
OASIS PortalFBXO10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO10
DgiDB (Drug Gene Interaction Database)FBXO10
DoCM (Curated mutations)FBXO10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO10 (select a term)
intoGenFBXO10
Cancer3DFBXO10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609092   
Orphanet
MedgenFBXO10
Genetic Testing Registry FBXO10
NextProtQ9UK96 [Medical]
TSGene26267
GENETestsFBXO10
Huge Navigator FBXO10 [HugePedia]
snp3D : Map Gene to Disease26267
BioCentury BCIQFBXO10
ClinGenFBXO10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26267
Chemical/Pharm GKB GenePA28030
Clinical trialFBXO10
Miscellaneous
canSAR (ICR)FBXO10 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO10
EVEXFBXO10
GoPubMedFBXO10
iHOPFBXO10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:57 CEST 2017

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