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FBXO15 (F-box protein 15)

Identity

Alias_namesF-box only protein 15
Alias_symbol (synonym)MGC39671
FBX15
Other alias
HGNC (Hugo) FBXO15
LocusID (NCBI) 201456
Atlas_Id 63321
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 74073353 and ends at 74147865 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNN2 (19p13.3) / FBXO15 (18q22.3)ZBTB7C (18q21.1) / FBXO15 (18q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO15   13617
Cards
Entrez_Gene (NCBI)FBXO15  201456  F-box protein 15
AliasesFBX15
GeneCards (Weizmann)FBXO15
Ensembl hg19 (Hinxton)ENSG00000141665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141665 [Gene_View]  chr18:74073353-74147865 [Contig_View]  FBXO15 [Vega]
ICGC DataPortalENSG00000141665
TCGA cBioPortalFBXO15
AceView (NCBI)FBXO15
Genatlas (Paris)FBXO15
WikiGenes201456
SOURCE (Princeton)FBXO15
Genetics Home Reference (NIH)FBXO15
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO15  -     chr18:74073353-74147865 -  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO15  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblFBXO15 - 18q22.3 [CytoView hg19]  FBXO15 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBIFBXO15 [Mapview hg19]  FBXO15 [Mapview hg38]
OMIM609093   
Gene and transcription
Genbank (Entrez)AK093252 AK094215 BC029579 BI829755 BU729305
RefSeq transcript (Entrez)NM_001142958 NM_152676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO15
Cluster EST : UnigeneHs.664011 [ NCBI ]
CGAP (NCI)Hs.664011
Alternative Splicing GalleryENSG00000141665
Gene ExpressionFBXO15 [ NCBI-GEO ]   FBXO15 [ EBI - ARRAY_EXPRESS ]   FBXO15 [ SEEK ]   FBXO15 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201456
GTEX Portal (Tissue expression)FBXO15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCQ5
Splice isoforms : SwissVarQ8NCQ5
PhosPhoSitePlusQ8NCQ5
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO15
DMDM Disease mutations201456
Blocks (Seattle)FBXO15
SuperfamilyQ8NCQ5
Human Protein AtlasENSG00000141665
Peptide AtlasQ8NCQ5
HPRD16435
IPIIPI00168421   IPI00643350   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCQ5
IntAct (EBI)Q8NCQ5
FunCoupENSG00000141665
BioGRIDFBXO15
STRING (EMBL)FBXO15
ZODIACFBXO15
Ontologies - Pathways
QuickGOQ8NCQ5
Ontology : AmiGOubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytosol  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytosol  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkFBXO15
Atlas of Cancer Signalling NetworkFBXO15
Wikipedia pathwaysFBXO15
Orthology - Evolution
OrthoDB201456
GeneTree (enSembl)ENSG00000141665
Phylogenetic Trees/Animal Genes : TreeFamFBXO15
HOVERGENQ8NCQ5
HOGENOMQ8NCQ5
Homologs : HomoloGeneFBXO15
Homology/Alignments : Family Browser (UCSC)FBXO15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO15
dbVarFBXO15
ClinVarFBXO15
1000_GenomesFBXO15 
Exome Variant ServerFBXO15
ExAC (Exome Aggregation Consortium)FBXO15 (select the gene name)
Genetic variants : HAPMAP201456
Genomic Variants (DGV)FBXO15 [DGVbeta]
DECIPHERFBXO15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO15 
Mutations
ICGC Data PortalFBXO15 
TCGA Data PortalFBXO15 
Broad Tumor PortalFBXO15
OASIS PortalFBXO15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO15
DgiDB (Drug Gene Interaction Database)FBXO15
DoCM (Curated mutations)FBXO15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO15 (select a term)
intoGenFBXO15
Cancer3DFBXO15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609093   
Orphanet
MedgenFBXO15
Genetic Testing Registry FBXO15
NextProtQ8NCQ5 [Medical]
TSGene201456
GENETestsFBXO15
Target ValidationFBXO15
Huge Navigator FBXO15 [HugePedia]
snp3D : Map Gene to Disease201456
BioCentury BCIQFBXO15
ClinGenFBXO15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201456
Chemical/Pharm GKB GenePA134894755
Clinical trialFBXO15
Miscellaneous
canSAR (ICR)FBXO15 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO15
EVEXFBXO15
GoPubMedFBXO15
iHOPFBXO15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:01 CEST 2017

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