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FBXO16 (F-box protein 16)

Identity

Alias (NCBI)FBX16
HGNC (Hugo) FBXO16
HGNC Alias symbFBX16
HGNC Previous nameF-box only protein 16
LocusID (NCBI) 157574
Atlas_Id 57820
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 28428412 and ends at 28490229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FBXO16 (8p21.1)::ADAM32 (8p11.22)GTF2E2 (8p12)::FBXO16 (8p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FBXO16   13618
Cards
Entrez_Gene (NCBI)FBXO16    F-box protein 16
AliasesFBX16
GeneCards (Weizmann)FBXO16
Ensembl hg19 (Hinxton)ENSG00000214050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214050 [Gene_View]  ENSG00000214050 [Sequence]  chr8:28428412-28490229 [Contig_View]  FBXO16 [Vega]
ICGC DataPortalENSG00000214050
TCGA cBioPortalFBXO16
AceView (NCBI)FBXO16
Genatlas (Paris)FBXO16
SOURCE (Princeton)FBXO16
Genetics Home Reference (NIH)FBXO16
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO16  -     chr8:28428412-28490229 -  8p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO16  -     8p21.1   [Description]    (hg19-Feb_2009)
GoldenPathFBXO16 - 8p21.1 [CytoView hg19]  FBXO16 - 8p21.1 [CytoView hg38]
ImmunoBaseENSG00000214050
Genome Data Viewer NCBIFBXO16 [Mapview hg19]  
OMIM608519   
Gene and transcription
Genbank (Entrez)AA765256 AF453435 AK098243 AL560247 BC074986
RefSeq transcript (Entrez)NM_001258211 NM_172366
Consensus coding sequences : CCDS (NCBI)FBXO16
Gene ExpressionFBXO16 [ NCBI-GEO ]   FBXO16 [ EBI - ARRAY_EXPRESS ]   FBXO16 [ SEEK ]   FBXO16 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO16 [ Firebrowse - Broad ]
GenevisibleExpression of FBXO16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157574
GTEX Portal (Tissue expression)FBXO16
Human Protein AtlasENSG00000214050-FBXO16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX29
PhosPhoSitePlusQ8IX29
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box-like_dom_sf    F-box_dom   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO16
SuperfamilyQ8IX29
AlphaFold pdb e-kbQ8IX29   
Human Protein Atlas [tissue]ENSG00000214050-FBXO16 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8IX29
IntAct (EBI)Q8IX29
BioGRIDFBXO16
STRING (EMBL)FBXO16
ZODIACFBXO16
Ontologies - Pathways
QuickGOQ8IX29
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFBXO16
Atlas of Cancer Signalling NetworkFBXO16
Wikipedia pathwaysFBXO16
Orthology - Evolution
OrthoDB157574
GeneTree (enSembl)ENSG00000214050
Phylogenetic Trees/Animal Genes : TreeFamFBXO16
Homologs : HomoloGeneFBXO16
Homology/Alignments : Family Browser (UCSC)FBXO16
Gene fusions - Rearrangements
Fusion : QuiverFBXO16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO16
dbVarFBXO16
ClinVarFBXO16
MonarchFBXO16
1000_GenomesFBXO16 
Exome Variant ServerFBXO16
GNOMAD BrowserENSG00000214050
Varsome BrowserFBXO16
ACMGFBXO16 variants
VarityQ8IX29
Genomic Variants (DGV)FBXO16 [DGVbeta]
DECIPHERFBXO16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO16 
Mutations
ICGC Data PortalFBXO16 
TCGA Data PortalFBXO16 
Broad Tumor PortalFBXO16
OASIS PortalFBXO16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFBXO16
Mutations and Diseases : HGMDFBXO16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFBXO16
DgiDB (Drug Gene Interaction Database)FBXO16
DoCM (Curated mutations)FBXO16
CIViC (Clinical Interpretations of Variants in Cancer)FBXO16
Cancer3DFBXO16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608519   
Orphanet
DisGeNETFBXO16
MedgenFBXO16
Genetic Testing Registry FBXO16
NextProtQ8IX29 [Medical]
GENETestsFBXO16
Target ValidationFBXO16
Huge Navigator FBXO16 [HugePedia]
ClinGenFBXO16
Clinical trials, drugs, therapy
MyCancerGenomeFBXO16
Protein Interactions : CTDFBXO16
Pharm GKB GenePA134901223
PharosQ8IX29
Clinical trialFBXO16
Miscellaneous
canSAR (ICR)FBXO16
HarmonizomeFBXO16
ARCHS4FBXO16
DataMed IndexFBXO16
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFBXO16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jan 17 15:24:26 CET 2022

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