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FBXO16 (F-box protein 16)

Identity

Alias_namesF-box only protein 16
Alias_symbol (synonym)FBX16
Other alias
HGNC (Hugo) FBXO16
LocusID (NCBI) 157574
Atlas_Id 63322
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 28285926 and ends at 28347835 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBXO16 (8p21.1) / ADAM32 (8p11.22)GTF2E2 (8p12) / FBXO16 (8p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO16   13618
Cards
Entrez_Gene (NCBI)FBXO16  157574  F-box protein 16
AliasesFBX16
GeneCards (Weizmann)FBXO16
Ensembl hg19 (Hinxton)ENSG00000214050 [Gene_View]  chr8:28285926-28347835 [Contig_View]  FBXO16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214050 [Gene_View]  chr8:28285926-28347835 [Contig_View]  FBXO16 [Vega]
ICGC DataPortalENSG00000214050
TCGA cBioPortalFBXO16
AceView (NCBI)FBXO16
Genatlas (Paris)FBXO16
WikiGenes157574
SOURCE (Princeton)FBXO16
Genetics Home Reference (NIH)FBXO16
Genomic and cartography
GoldenPath hg19 (UCSC)FBXO16  -     chr8:28285926-28347835 -  8p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXO16  -     8p21.1   [Description]    (hg38-Dec_2013)
EnsemblFBXO16 - 8p21.1 [CytoView hg19]  FBXO16 - 8p21.1 [CytoView hg38]
Mapping of homologs : NCBIFBXO16 [Mapview hg19]  FBXO16 [Mapview hg38]
OMIM608519   
Gene and transcription
Genbank (Entrez)AA765256 AF453435 AK098243 AL560247 BC074986
RefSeq transcript (Entrez)NM_001258211 NM_172366
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)FBXO16
Cluster EST : UnigeneHs.741522 [ NCBI ]
CGAP (NCI)Hs.741522
Alternative Splicing GalleryENSG00000214050
Gene ExpressionFBXO16 [ NCBI-GEO ]   FBXO16 [ EBI - ARRAY_EXPRESS ]   FBXO16 [ SEEK ]   FBXO16 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157574
GTEX Portal (Tissue expression)FBXO16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX29
Splice isoforms : SwissVarQ8IX29
PhosPhoSitePlusQ8IX29
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO16
DMDM Disease mutations157574
Blocks (Seattle)FBXO16
SuperfamilyQ8IX29
Human Protein AtlasENSG00000214050
Peptide AtlasQ8IX29
HPRD16347
IPIIPI00217373   IPI00847487   IPI00981481   IPI00973050   IPI01015057   IPI00973904   IPI00789209   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX29
IntAct (EBI)Q8IX29
FunCoupENSG00000214050
BioGRIDFBXO16
STRING (EMBL)FBXO16
ZODIACFBXO16
Ontologies - Pathways
QuickGOQ8IX29
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFBXO16
Atlas of Cancer Signalling NetworkFBXO16
Wikipedia pathwaysFBXO16
Orthology - Evolution
OrthoDB157574
GeneTree (enSembl)ENSG00000214050
Phylogenetic Trees/Animal Genes : TreeFamFBXO16
HOVERGENQ8IX29
HOGENOMQ8IX29
Homologs : HomoloGeneFBXO16
Homology/Alignments : Family Browser (UCSC)FBXO16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO16
dbVarFBXO16
ClinVarFBXO16
1000_GenomesFBXO16 
Exome Variant ServerFBXO16
ExAC (Exome Aggregation Consortium)FBXO16 (select the gene name)
Genetic variants : HAPMAP157574
Genomic Variants (DGV)FBXO16 [DGVbeta]
DECIPHER (Syndromes)8:28285926-28347835  ENSG00000214050
CONAN: Copy Number AnalysisFBXO16 
Mutations
ICGC Data PortalFBXO16 
TCGA Data PortalFBXO16 
Broad Tumor PortalFBXO16
OASIS PortalFBXO16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO16
DgiDB (Drug Gene Interaction Database)FBXO16
DoCM (Curated mutations)FBXO16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO16 (select a term)
intoGenFBXO16
Cancer3DFBXO16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608519   
Orphanet
MedgenFBXO16
Genetic Testing Registry FBXO16
NextProtQ8IX29 [Medical]
TSGene157574
GENETestsFBXO16
Huge Navigator FBXO16 [HugePedia]
snp3D : Map Gene to Disease157574
BioCentury BCIQFBXO16
ClinGenFBXO16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157574
Chemical/Pharm GKB GenePA134901223
Clinical trialFBXO16
Miscellaneous
canSAR (ICR)FBXO16 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO16
EVEXFBXO16
GoPubMedFBXO16
iHOPFBXO16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:35 CET 2017

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