Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FBXO17 (F-box protein 17)

Identity

Alias_namesFBXO26
F-box only protein 17
Alias_symbol (synonym)FBG4
FLJ25205
MGC9379
FLJ11798
Fbx17
Other aliasFBX26
HGNC (Hugo) FBXO17
LocusID (NCBI) 115290
Atlas_Id 63323
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39432041 and ends at 39466453 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO17   18754
Cards
Entrez_Gene (NCBI)FBXO17  115290  F-box protein 17
AliasesFBG4; FBX26; FBXO26; Fbx17
GeneCards (Weizmann)FBXO17
Ensembl hg19 (Hinxton)ENSG00000269190 [Gene_View]  chr19:39432041-39466453 [Contig_View]  FBXO17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000269190 [Gene_View]  chr19:39432041-39466453 [Contig_View]  FBXO17 [Vega]
ICGC DataPortalENSG00000269190
TCGA cBioPortalFBXO17
AceView (NCBI)FBXO17
Genatlas (Paris)FBXO17
WikiGenes115290
SOURCE (Princeton)FBXO17
Genetics Home Reference (NIH)FBXO17
Genomic and cartography
GoldenPath hg19 (UCSC)FBXO17  -     chr19:39432041-39466453 -  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXO17  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblFBXO17 - 19q13.2 [CytoView hg19]  FBXO17 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIFBXO17 [Mapview hg19]  FBXO17 [Mapview hg38]
OMIM609094   
Gene and transcription
Genbank (Entrez)AF386743 AI050825 AK021860 AK057934 BC012385
RefSeq transcript (Entrez)NM_024907 NM_148169
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)FBXO17
Cluster EST : UnigeneHs.531770 [ NCBI ]
CGAP (NCI)Hs.531770
Alternative Splicing GalleryENSG00000269190
Gene ExpressionFBXO17 [ NCBI-GEO ]   FBXO17 [ EBI - ARRAY_EXPRESS ]   FBXO17 [ SEEK ]   FBXO17 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115290
GTEX Portal (Tissue expression)FBXO17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EF6
Splice isoforms : SwissVarQ96EF6
PhosPhoSitePlusQ96EF6
Domaine pattern : Prosite (Expaxy)FBA (PS51114)    FBOX (PS50181)   
Domains : Interpro (EBI)F-box-assoc_dom    F-box_dom    Galactose-bd-like   
Domain families : Pfam (Sanger)F-box-like (PF12937)    FBA (PF04300)   
Domain families : Pfam (NCBI)pfam12937    pfam04300   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO17
DMDM Disease mutations115290
Blocks (Seattle)FBXO17
SuperfamilyQ96EF6
Human Protein AtlasENSG00000269190
Peptide AtlasQ96EF6
HPRD16436
IPIIPI00061460   IPI00909038   IPI00645782   IPI00927163   
Protein Interaction databases
DIP (DOE-UCLA)Q96EF6
IntAct (EBI)Q96EF6
FunCoupENSG00000269190
BioGRIDFBXO17
STRING (EMBL)FBXO17
ZODIACFBXO17
Ontologies - Pathways
QuickGOQ96EF6
Ontology : AmiGOglycoprotein binding  protein binding  SCF ubiquitin ligase complex  
Ontology : EGO-EBIglycoprotein binding  protein binding  SCF ubiquitin ligase complex  
NDEx NetworkFBXO17
Atlas of Cancer Signalling NetworkFBXO17
Wikipedia pathwaysFBXO17
Orthology - Evolution
OrthoDB115290
GeneTree (enSembl)ENSG00000269190
Phylogenetic Trees/Animal Genes : TreeFamFBXO17
HOVERGENQ96EF6
HOGENOMQ96EF6
Homologs : HomoloGeneFBXO17
Homology/Alignments : Family Browser (UCSC)FBXO17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO17
dbVarFBXO17
ClinVarFBXO17
1000_GenomesFBXO17 
Exome Variant ServerFBXO17
ExAC (Exome Aggregation Consortium)FBXO17 (select the gene name)
Genetic variants : HAPMAP115290
Genomic Variants (DGV)FBXO17 [DGVbeta]
DECIPHER (Syndromes)19:39432041-39466453  ENSG00000269190
CONAN: Copy Number AnalysisFBXO17 
Mutations
ICGC Data PortalFBXO17 
TCGA Data PortalFBXO17 
Broad Tumor PortalFBXO17
OASIS PortalFBXO17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO17
DgiDB (Drug Gene Interaction Database)FBXO17
DoCM (Curated mutations)FBXO17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO17 (select a term)
intoGenFBXO17
Cancer3DFBXO17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609094   
Orphanet
MedgenFBXO17
Genetic Testing Registry FBXO17
NextProtQ96EF6 [Medical]
TSGene115290
GENETestsFBXO17
Huge Navigator FBXO17 [HugePedia]
snp3D : Map Gene to Disease115290
BioCentury BCIQFBXO17
ClinGenFBXO17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115290
Chemical/Pharm GKB GenePA38676
Clinical trialFBXO17
Miscellaneous
canSAR (ICR)FBXO17 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO17
EVEXFBXO17
GoPubMedFBXO17
iHOPFBXO17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:36 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.