Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FBXO27 (F-box protein 27)

Identity

Alias_namesF-box only protein 27
Alias_symbol (synonym)Fbg5
Fbx27
Other aliasFBG5
HGNC (Hugo) FBXO27
LocusID (NCBI) 126433
Atlas_Id 63329
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39024021 and ends at 39032596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FBXO27 (19q13.2) / FBXO27 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO27   18753
Cards
Entrez_Gene (NCBI)FBXO27  126433  F-box protein 27
AliasesFBG5; Fbx27
GeneCards (Weizmann)FBXO27
Ensembl hg19 (Hinxton)ENSG00000161243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161243 [Gene_View]  chr19:39024021-39032596 [Contig_View]  FBXO27 [Vega]
ICGC DataPortalENSG00000161243
TCGA cBioPortalFBXO27
AceView (NCBI)FBXO27
Genatlas (Paris)FBXO27
WikiGenes126433
SOURCE (Princeton)FBXO27
Genetics Home Reference (NIH)FBXO27
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO27  -     chr19:39024021-39032596 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO27  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblFBXO27 - 19q13.2 [CytoView hg19]  FBXO27 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIFBXO27 [Mapview hg19]  FBXO27 [Mapview hg38]
OMIM609099   
Gene and transcription
Genbank (Entrez)AF436061 BC014527 BC030060 BX377760 HQ448139
RefSeq transcript (Entrez)NM_178820
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO27
Cluster EST : UnigeneHs.187461 [ NCBI ]
CGAP (NCI)Hs.187461
Alternative Splicing GalleryENSG00000161243
Gene ExpressionFBXO27 [ NCBI-GEO ]   FBXO27 [ EBI - ARRAY_EXPRESS ]   FBXO27 [ SEEK ]   FBXO27 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126433
GTEX Portal (Tissue expression)FBXO27
Human Protein AtlasENSG00000161243-FBXO27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI29
Splice isoforms : SwissVarQ8NI29
PhosPhoSitePlusQ8NI29
Domaine pattern : Prosite (Expaxy)FBA (PS51114)    FBOX (PS50181)   
Domains : Interpro (EBI)F-box-assoc_dom    F-box_dom    Galactose-bd-like   
Domain families : Pfam (Sanger)F-box (PF00646)    FBA (PF04300)   
Domain families : Pfam (NCBI)pfam00646    pfam04300   
Domain families : Smart (EMBL)FBA (SM01198)  FBOX (SM00256)  
Conserved Domain (NCBI)FBXO27
DMDM Disease mutations126433
Blocks (Seattle)FBXO27
SuperfamilyQ8NI29
Human Protein Atlas [tissue]ENSG00000161243-FBXO27 [tissue]
Peptide AtlasQ8NI29
HPRD16440
IPIIPI00304056   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI29
IntAct (EBI)Q8NI29
FunCoupENSG00000161243
BioGRIDFBXO27
STRING (EMBL)FBXO27
ZODIACFBXO27
Ontologies - Pathways
QuickGOQ8NI29
Ontology : AmiGOprotein polyubiquitination  glycoprotein binding  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  SCF ubiquitin ligase complex  
Ontology : EGO-EBIprotein polyubiquitination  glycoprotein binding  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  SCF ubiquitin ligase complex  
NDEx NetworkFBXO27
Atlas of Cancer Signalling NetworkFBXO27
Wikipedia pathwaysFBXO27
Orthology - Evolution
OrthoDB126433
GeneTree (enSembl)ENSG00000161243
Phylogenetic Trees/Animal Genes : TreeFamFBXO27
HOVERGENQ8NI29
HOGENOMQ8NI29
Homologs : HomoloGeneFBXO27
Homology/Alignments : Family Browser (UCSC)FBXO27
Gene fusions - Rearrangements
Tumor Fusion PortalFBXO27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO27
dbVarFBXO27
ClinVarFBXO27
1000_GenomesFBXO27 
Exome Variant ServerFBXO27
ExAC (Exome Aggregation Consortium)ENSG00000161243
GNOMAD BrowserENSG00000161243
Genetic variants : HAPMAP126433
Genomic Variants (DGV)FBXO27 [DGVbeta]
DECIPHERFBXO27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO27 
Mutations
ICGC Data PortalFBXO27 
TCGA Data PortalFBXO27 
Broad Tumor PortalFBXO27
OASIS PortalFBXO27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO27
DgiDB (Drug Gene Interaction Database)FBXO27
DoCM (Curated mutations)FBXO27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO27 (select a term)
intoGenFBXO27
Cancer3DFBXO27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609099   
Orphanet
DisGeNETFBXO27
MedgenFBXO27
Genetic Testing Registry FBXO27
NextProtQ8NI29 [Medical]
TSGene126433
GENETestsFBXO27
Target ValidationFBXO27
Huge Navigator FBXO27 [HugePedia]
snp3D : Map Gene to Disease126433
BioCentury BCIQFBXO27
ClinGenFBXO27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126433
Chemical/Pharm GKB GenePA38675
Clinical trialFBXO27
Miscellaneous
canSAR (ICR)FBXO27 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO27
EVEXFBXO27
GoPubMedFBXO27
iHOPFBXO27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:36 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.