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FBXO28 (F-box protein 28)

Identity

Alias_symbol (synonym)FLJ10766
KIAA0483
Fbx28
CENP-30
Other alias
HGNC (Hugo) FBXO28
LocusID (NCBI) 23219
Atlas_Id 53564
Location 1q42.11  [Link to chromosome band 1q42]
Location_base_pair Starts at 224301789 and ends at 224349749 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBXO28 (1q42.11) / IFI16 (1q23.1)FBXO28 (1q42.11) / LYZL2 (10p11.23)FBXO28 1q42.11 / LYZL2 10p11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO28   29046
Cards
Entrez_Gene (NCBI)FBXO28  23219  F-box protein 28
AliasesCENP-30; Fbx28
GeneCards (Weizmann)FBXO28
Ensembl hg19 (Hinxton)ENSG00000143756 [Gene_View]  chr1:224301789-224349749 [Contig_View]  FBXO28 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143756 [Gene_View]  chr1:224301789-224349749 [Contig_View]  FBXO28 [Vega]
ICGC DataPortalENSG00000143756
TCGA cBioPortalFBXO28
AceView (NCBI)FBXO28
Genatlas (Paris)FBXO28
WikiGenes23219
SOURCE (Princeton)FBXO28
Genetics Home Reference (NIH)FBXO28
Genomic and cartography
GoldenPath hg19 (UCSC)FBXO28  -     chr1:224301789-224349749 +  1q42.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXO28  -     1q42.11   [Description]    (hg38-Dec_2013)
EnsemblFBXO28 - 1q42.11 [CytoView hg19]  FBXO28 - 1q42.11 [CytoView hg38]
Mapping of homologs : NCBIFBXO28 [Mapview hg19]  FBXO28 [Mapview hg38]
OMIM609100   
Gene and transcription
Genbank (Entrez)AB007952 AI354536 AK001628 AK303381 AK307892
RefSeq transcript (Entrez)NM_001136115 NM_015176
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)FBXO28
Cluster EST : UnigeneHs.713992 [ NCBI ]
CGAP (NCI)Hs.713992
Alternative Splicing GalleryENSG00000143756
Gene ExpressionFBXO28 [ NCBI-GEO ]   FBXO28 [ EBI - ARRAY_EXPRESS ]   FBXO28 [ SEEK ]   FBXO28 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23219
GTEX Portal (Tissue expression)FBXO28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVF7
Splice isoforms : SwissVarQ9NVF7
PhosPhoSitePlusQ9NVF7
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom   
Domain families : Pfam (Sanger)F-box (PF00646)   
Domain families : Pfam (NCBI)pfam00646   
Conserved Domain (NCBI)FBXO28
DMDM Disease mutations23219
Blocks (Seattle)FBXO28
SuperfamilyQ9NVF7
Human Protein AtlasENSG00000143756
Peptide AtlasQ9NVF7
HPRD12367
IPIIPI00008542   IPI00914607   IPI00983390   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVF7
IntAct (EBI)Q9NVF7
FunCoupENSG00000143756
BioGRIDFBXO28
STRING (EMBL)FBXO28
ZODIACFBXO28
Ontologies - Pathways
QuickGOQ9NVF7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFBXO28
Atlas of Cancer Signalling NetworkFBXO28
Wikipedia pathwaysFBXO28
Orthology - Evolution
OrthoDB23219
GeneTree (enSembl)ENSG00000143756
Phylogenetic Trees/Animal Genes : TreeFamFBXO28
HOVERGENQ9NVF7
HOGENOMQ9NVF7
Homologs : HomoloGeneFBXO28
Homology/Alignments : Family Browser (UCSC)FBXO28
Gene fusions - Rearrangements
Fusion : MitelmanFBXO28/LYZL2 [1q42.11/10p11.23]  
Fusion: TCGAFBXO28 1q42.11 LYZL2 10p11.23 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO28
dbVarFBXO28
ClinVarFBXO28
1000_GenomesFBXO28 
Exome Variant ServerFBXO28
ExAC (Exome Aggregation Consortium)FBXO28 (select the gene name)
Genetic variants : HAPMAP23219
Genomic Variants (DGV)FBXO28 [DGVbeta]
DECIPHER (Syndromes)1:224301789-224349749  ENSG00000143756
CONAN: Copy Number AnalysisFBXO28 
Mutations
ICGC Data PortalFBXO28 
TCGA Data PortalFBXO28 
Broad Tumor PortalFBXO28
OASIS PortalFBXO28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO28
DgiDB (Drug Gene Interaction Database)FBXO28
DoCM (Curated mutations)FBXO28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO28 (select a term)
intoGenFBXO28
Cancer3DFBXO28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609100   
Orphanet
MedgenFBXO28
Genetic Testing Registry FBXO28
NextProtQ9NVF7 [Medical]
TSGene23219
GENETestsFBXO28
Huge Navigator FBXO28 [HugePedia]
snp3D : Map Gene to Disease23219
BioCentury BCIQFBXO28
ClinGenFBXO28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23219
Chemical/Pharm GKB GenePA134876528
Clinical trialFBXO28
Miscellaneous
canSAR (ICR)FBXO28 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO28
EVEXFBXO28
GoPubMedFBXO28
iHOPFBXO28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:46 CET 2017

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