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FBXO28 (F-box protein 28)

Identity

Alias (NCBI)CENP-30
Fbx28
HGNC (Hugo) FBXO28
HGNC Alias symbFLJ10766
KIAA0483
Fbx28
CENP-30
HGNC Alias namecentromere protein 30
LocusID (NCBI) 23219
Atlas_Id 53564
Location 1q42.11  [Link to chromosome band 1q42]
Location_base_pair Starts at 224114111 and ends at 224162047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FBXO28 (1q42.11) / IFI16 (1q23.1)FBXO28 (1q42.11) / LYZL2 (10p11.23)FBXO28 1q42.11 / LYZL2 10p11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FBXO28   29046
Cards
Entrez_Gene (NCBI)FBXO28    F-box protein 28
AliasesCENP-30; Fbx28
GeneCards (Weizmann)FBXO28
Ensembl hg19 (Hinxton)ENSG00000143756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143756 [Gene_View]  ENSG00000143756 [Sequence]  chr1:224114111-224162047 [Contig_View]  FBXO28 [Vega]
ICGC DataPortalENSG00000143756
TCGA cBioPortalFBXO28
AceView (NCBI)FBXO28
Genatlas (Paris)FBXO28
SOURCE (Princeton)FBXO28
Genetics Home Reference (NIH)FBXO28
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO28  -     chr1:224114111-224162047 +  1q42.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO28  -     1q42.11   [Description]    (hg19-Feb_2009)
GoldenPathFBXO28 - 1q42.11 [CytoView hg19]  FBXO28 - 1q42.11 [CytoView hg38]
ImmunoBaseENSG00000143756
Genome Data Viewer NCBIFBXO28 [Mapview hg19]  
OMIM609100   
Gene and transcription
Genbank (Entrez)AB007952 AI354536 AK001628 AK303381 AK307892
RefSeq transcript (Entrez)NM_001136115 NM_015176
Consensus coding sequences : CCDS (NCBI)FBXO28
Gene ExpressionFBXO28 [ NCBI-GEO ]   FBXO28 [ EBI - ARRAY_EXPRESS ]   FBXO28 [ SEEK ]   FBXO28 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO28 [ Firebrowse - Broad ]
GenevisibleExpression of FBXO28 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23219
GTEX Portal (Tissue expression)FBXO28
Human Protein AtlasENSG00000143756-FBXO28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVF7
PhosPhoSitePlusQ9NVF7
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box-like_dom_sf    F-box_dom    FBXO28   
Domain families : Pfam (Sanger)F-box (PF00646)   
Domain families : Pfam (NCBI)pfam00646   
Conserved Domain (NCBI)FBXO28
SuperfamilyQ9NVF7
AlphaFold pdb e-kbQ9NVF7   
Human Protein Atlas [tissue]ENSG00000143756-FBXO28 [tissue]
HPRD12367
Protein Interaction databases
DIP (DOE-UCLA)Q9NVF7
IntAct (EBI)Q9NVF7
BioGRIDFBXO28
STRING (EMBL)FBXO28
ZODIACFBXO28
Ontologies - Pathways
QuickGOQ9NVF7
Ontology : AmiGOprotein polyubiquitination  kinetochore  protein binding  identical protein binding  
Ontology : EGO-EBIprotein polyubiquitination  kinetochore  protein binding  identical protein binding  
NDEx NetworkFBXO28
Atlas of Cancer Signalling NetworkFBXO28
Wikipedia pathwaysFBXO28
Orthology - Evolution
OrthoDB23219
GeneTree (enSembl)ENSG00000143756
Phylogenetic Trees/Animal Genes : TreeFamFBXO28
Homologs : HomoloGeneFBXO28
Homology/Alignments : Family Browser (UCSC)FBXO28
Gene fusions - Rearrangements
Fusion : MitelmanFBXO28/LYZL2 [1q42.11/10p11.23]  
Fusion : QuiverFBXO28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO28
dbVarFBXO28
ClinVarFBXO28
MonarchFBXO28
1000_GenomesFBXO28 
Exome Variant ServerFBXO28
GNOMAD BrowserENSG00000143756
Varsome BrowserFBXO28
ACMGFBXO28 variants
VarityQ9NVF7
Genomic Variants (DGV)FBXO28 [DGVbeta]
DECIPHERFBXO28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO28 
Mutations
ICGC Data PortalFBXO28 
TCGA Data PortalFBXO28 
Broad Tumor PortalFBXO28
OASIS PortalFBXO28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO28  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFBXO28
Mutations and Diseases : HGMDFBXO28
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFBXO28
DgiDB (Drug Gene Interaction Database)FBXO28
DoCM (Curated mutations)FBXO28
CIViC (Clinical Interpretations of Variants in Cancer)FBXO28
Cancer3DFBXO28
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609100   
Orphanet
DisGeNETFBXO28
MedgenFBXO28
Genetic Testing Registry FBXO28
NextProtQ9NVF7 [Medical]
GENETestsFBXO28
Target ValidationFBXO28
Huge Navigator FBXO28 [HugePedia]
ClinGenFBXO28
Clinical trials, drugs, therapy
MyCancerGenomeFBXO28
Protein Interactions : CTDFBXO28
Pharm GKB GenePA134876528
PharosQ9NVF7
Clinical trialFBXO28
Miscellaneous
canSAR (ICR)FBXO28
HarmonizomeFBXO28
DataMed IndexFBXO28
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFBXO28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:09:08 CEST 2021

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