Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FBXO34 (F-box protein 34)

Identity

Alias_namesF-box only protein 34
Alias_symbol (synonym)FLJ20725
Fbx34
Other aliasCGI-301
HGNC (Hugo) FBXO34
LocusID (NCBI) 55030
Atlas_Id 46710
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 55271303 and ends at 55353611 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADGRV1 (5q14.3) / FBXO34 (14q22.3)CHMP4B (20q11.22) / FBXO34 (14q22.3)FBXO34 (14q22.3) / GATAD2B (1q21.3)
FBXO34 (14q22.3) / HECTD1 (14q12)FBXO34 (14q22.3) / LGALS3 (14q22.3)FBXO34 (14q22.3) / PDXDC1 (16p13.11)
FBXO34 (14q22.3) / SSRP1 (11q12.1)HOMEZ (14q11.2) / FBXO34 (14q22.3)INPP5K (17p13.3) / FBXO34 (14q22.3)
PPP4R3A (14q32.12) / FBXO34 (14q22.3)TOB1 (17q21.33) / FBXO34 (14q22.3)FBXO34 14q22.3 / HECTD1 14q12
FBXO34 14q22.3 / LGALS3 14q22.3SMEK1 FBXO34 14q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO34   20201
Cards
Entrez_Gene (NCBI)FBXO34  55030  F-box protein 34
AliasesCGI-301; Fbx34
GeneCards (Weizmann)FBXO34
Ensembl hg19 (Hinxton)ENSG00000178974 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178974 [Gene_View]  chr14:55271303-55353611 [Contig_View]  FBXO34 [Vega]
ICGC DataPortalENSG00000178974
TCGA cBioPortalFBXO34
AceView (NCBI)FBXO34
Genatlas (Paris)FBXO34
WikiGenes55030
SOURCE (Princeton)FBXO34
Genetics Home Reference (NIH)FBXO34
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO34  -     chr14:55271303-55353611 +  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO34  -     14q22.3   [Description]    (hg19-Feb_2009)
EnsemblFBXO34 - 14q22.3 [CytoView hg19]  FBXO34 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBIFBXO34 [Mapview hg19]  FBXO34 [Mapview hg38]
OMIM609104   
Gene and transcription
Genbank (Entrez)AI911690 AK000732 AK092873 AK092879 AK225367
RefSeq transcript (Entrez)NM_017943 NM_152231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO34
Cluster EST : UnigeneHs.654725 [ NCBI ]
CGAP (NCI)Hs.654725
Alternative Splicing GalleryENSG00000178974
Gene ExpressionFBXO34 [ NCBI-GEO ]   FBXO34 [ EBI - ARRAY_EXPRESS ]   FBXO34 [ SEEK ]   FBXO34 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55030
GTEX Portal (Tissue expression)FBXO34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWN3
Splice isoforms : SwissVarQ9NWN3
PhosPhoSitePlusQ9NWN3
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FBXO34
DMDM Disease mutations55030
Blocks (Seattle)FBXO34
SuperfamilyQ9NWN3
Human Protein AtlasENSG00000178974
Peptide AtlasQ9NWN3
HPRD16442
IPIIPI00171424   IPI00017327   IPI01025130   IPI00984418   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWN3
IntAct (EBI)Q9NWN3
FunCoupENSG00000178974
BioGRIDFBXO34
STRING (EMBL)FBXO34
ZODIACFBXO34
Ontologies - Pathways
QuickGOQ9NWN3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFBXO34
Atlas of Cancer Signalling NetworkFBXO34
Wikipedia pathwaysFBXO34
Orthology - Evolution
OrthoDB55030
GeneTree (enSembl)ENSG00000178974
Phylogenetic Trees/Animal Genes : TreeFamFBXO34
HOVERGENQ9NWN3
HOGENOMQ9NWN3
Homologs : HomoloGeneFBXO34
Homology/Alignments : Family Browser (UCSC)FBXO34
Gene fusions - Rearrangements
Fusion : MitelmanFBXO34/HECTD1 [14q22.3/14q12]  
Fusion : MitelmanFBXO34/LGALS3 [14q22.3/14q22.3]  [t(14;14)(q22;q22)]  
Fusion : MitelmanSMEK1/14q22.3 [FBXO34/t(14;14)(q22;q32)]  
Fusion: TCGAFBXO34 14q22.3 HECTD1 14q12 LUAD
Fusion: TCGAFBXO34 14q22.3 LGALS3 14q22.3 LUAD OV
Fusion: TCGASMEK1 FBXO34 14q22.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO34
dbVarFBXO34
ClinVarFBXO34
1000_GenomesFBXO34 
Exome Variant ServerFBXO34
ExAC (Exome Aggregation Consortium)FBXO34 (select the gene name)
Genetic variants : HAPMAP55030
Genomic Variants (DGV)FBXO34 [DGVbeta]
DECIPHERFBXO34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO34 
Mutations
ICGC Data PortalFBXO34 
TCGA Data PortalFBXO34 
Broad Tumor PortalFBXO34
OASIS PortalFBXO34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO34
DgiDB (Drug Gene Interaction Database)FBXO34
DoCM (Curated mutations)FBXO34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO34 (select a term)
intoGenFBXO34
Cancer3DFBXO34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609104   
Orphanet
MedgenFBXO34
Genetic Testing Registry FBXO34
NextProtQ9NWN3 [Medical]
TSGene55030
GENETestsFBXO34
Target ValidationFBXO34
Huge Navigator FBXO34 [HugePedia]
snp3D : Map Gene to Disease55030
BioCentury BCIQFBXO34
ClinGenFBXO34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55030
Chemical/Pharm GKB GenePA134910884
Clinical trialFBXO34
Miscellaneous
canSAR (ICR)FBXO34 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO34
EVEXFBXO34
GoPubMedFBXO34
iHOPFBXO34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:33:36 CEST 2017

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