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FBXO38 (F-box protein 38)

Identity

Alias_symbol (synonym)MOKA
SP329
FLJ13962
Fbx38
Other aliasHMN2D
HGNC (Hugo) FBXO38
LocusID (NCBI) 81545
Atlas_Id 46778
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 148383935 and ends at 148442836 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG4C (1p31.3) / FBXO38 (5q32)FBXO38 (5q32) / FBXO38 (5q32)FBXO38 (5q32) / RNF216 (7p22.1)
FBXO38 (5q32) / SPINK6 (5q32)ATG4C 1p31.3 / FBXO38 5q32FBXO38 5q32 / SPINK6 5q32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO38   28844
Cards
Entrez_Gene (NCBI)FBXO38  81545  F-box protein 38
AliasesFbx38; HMN2D; MOKA; SP329
GeneCards (Weizmann)FBXO38
Ensembl hg19 (Hinxton)ENSG00000145868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145868 [Gene_View]  chr5:148383935-148442836 [Contig_View]  FBXO38 [Vega]
ICGC DataPortalENSG00000145868
TCGA cBioPortalFBXO38
AceView (NCBI)FBXO38
Genatlas (Paris)FBXO38
WikiGenes81545
SOURCE (Princeton)FBXO38
Genetics Home Reference (NIH)FBXO38
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO38  -     chr5:148383935-148442836 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO38  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblFBXO38 - 5q32 [CytoView hg19]  FBXO38 - 5q32 [CytoView hg38]
Mapping of homologs : NCBIFBXO38 [Mapview hg19]  FBXO38 [Mapview hg38]
OMIM608533   615575   
Gene and transcription
Genbank (Entrez)AF177339 AF251055 AK024024 AK308414 AK313558
RefSeq transcript (Entrez)NM_001271723 NM_030793 NM_205836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO38
Cluster EST : UnigeneHs.483772 [ NCBI ]
CGAP (NCI)Hs.483772
Alternative Splicing GalleryENSG00000145868
Gene ExpressionFBXO38 [ NCBI-GEO ]   FBXO38 [ EBI - ARRAY_EXPRESS ]   FBXO38 [ SEEK ]   FBXO38 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81545
GTEX Portal (Tissue expression)FBXO38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIJ6
Splice isoforms : SwissVarQ6PIJ6
PhosPhoSitePlusQ6PIJ6
Domains : Interpro (EBI)F-box_dom    L_dom-like   
Domain families : Pfam (Sanger)F-box (PF00646)   
Domain families : Pfam (NCBI)pfam00646   
Conserved Domain (NCBI)FBXO38
DMDM Disease mutations81545
Blocks (Seattle)FBXO38
SuperfamilyQ6PIJ6
Human Protein AtlasENSG00000145868
Peptide AtlasQ6PIJ6
HPRD09775
IPIIPI00456676   IPI00456677   IPI00456678   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIJ6
IntAct (EBI)Q6PIJ6
FunCoupENSG00000145868
BioGRIDFBXO38
STRING (EMBL)FBXO38
ZODIACFBXO38
Ontologies - Pathways
QuickGOQ6PIJ6
Ontology : AmiGOnucleus  cytoplasm  positive regulation of neuron projection development  
Ontology : EGO-EBInucleus  cytoplasm  positive regulation of neuron projection development  
NDEx NetworkFBXO38
Atlas of Cancer Signalling NetworkFBXO38
Wikipedia pathwaysFBXO38
Orthology - Evolution
OrthoDB81545
GeneTree (enSembl)ENSG00000145868
Phylogenetic Trees/Animal Genes : TreeFamFBXO38
HOVERGENQ6PIJ6
HOGENOMQ6PIJ6
Homologs : HomoloGeneFBXO38
Homology/Alignments : Family Browser (UCSC)FBXO38
Gene fusions - Rearrangements
Fusion: TCGAFBXO38 5q32 SPINK6 5q32 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO38
dbVarFBXO38
ClinVarFBXO38
1000_GenomesFBXO38 
Exome Variant ServerFBXO38
ExAC (Exome Aggregation Consortium)FBXO38 (select the gene name)
Genetic variants : HAPMAP81545
Genomic Variants (DGV)FBXO38 [DGVbeta]
DECIPHERFBXO38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO38 
Mutations
ICGC Data PortalFBXO38 
TCGA Data PortalFBXO38 
Broad Tumor PortalFBXO38
OASIS PortalFBXO38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO38
DgiDB (Drug Gene Interaction Database)FBXO38
DoCM (Curated mutations)FBXO38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO38 (select a term)
intoGenFBXO38
Cancer3DFBXO38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608533    615575   
Orphanet16915   
MedgenFBXO38
Genetic Testing Registry FBXO38
NextProtQ6PIJ6 [Medical]
TSGene81545
GENETestsFBXO38
Huge Navigator FBXO38 [HugePedia]
snp3D : Map Gene to Disease81545
BioCentury BCIQFBXO38
ClinGenFBXO38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81545
Chemical/Pharm GKB GenePA134929999
Clinical trialFBXO38
Miscellaneous
canSAR (ICR)FBXO38 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO38
EVEXFBXO38
GoPubMedFBXO38
iHOPFBXO38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:40 CEST 2017

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