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FBXO39 (F-box protein 39)

Identity

Alias_symbol (synonym)MGC35179
Fbx39
CT144
Other alias
HGNC (Hugo) FBXO39
LocusID (NCBI) 162517
Atlas_Id 52316
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6776233 and ends at 6787646 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO39   28565
Cards
Entrez_Gene (NCBI)FBXO39  162517  F-box protein 39
AliasesCT144; Fbx39
GeneCards (Weizmann)FBXO39
Ensembl hg19 (Hinxton)ENSG00000177294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177294 [Gene_View]  chr17:6776233-6787646 [Contig_View]  FBXO39 [Vega]
ICGC DataPortalENSG00000177294
TCGA cBioPortalFBXO39
AceView (NCBI)FBXO39
Genatlas (Paris)FBXO39
WikiGenes162517
SOURCE (Princeton)FBXO39
Genetics Home Reference (NIH)FBXO39
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO39  -     chr17:6776233-6787646 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO39  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblFBXO39 - 17p13.1 [CytoView hg19]  FBXO39 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIFBXO39 [Mapview hg19]  FBXO39 [Mapview hg38]
OMIM609106   
Gene and transcription
Genbank (Entrez)AI125619 AK308712 AK311148 BC034782 BM554273
RefSeq transcript (Entrez)NM_153230
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO39
Cluster EST : UnigeneHs.368364 [ NCBI ]
CGAP (NCI)Hs.368364
Alternative Splicing GalleryENSG00000177294
Gene ExpressionFBXO39 [ NCBI-GEO ]   FBXO39 [ EBI - ARRAY_EXPRESS ]   FBXO39 [ SEEK ]   FBXO39 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162517
GTEX Portal (Tissue expression)FBXO39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4B4
Splice isoforms : SwissVarQ8N4B4
PhosPhoSitePlusQ8N4B4
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)F-box_dom    L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Conserved Domain (NCBI)FBXO39
DMDM Disease mutations162517
Blocks (Seattle)FBXO39
SuperfamilyQ8N4B4
Human Protein AtlasENSG00000177294
Peptide AtlasQ8N4B4
HPRD16444
IPIIPI00166674   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4B4
IntAct (EBI)Q8N4B4
FunCoupENSG00000177294
BioGRIDFBXO39
STRING (EMBL)FBXO39
ZODIACFBXO39
Ontologies - Pathways
QuickGOQ8N4B4
Ontology : AmiGOSCF ubiquitin ligase complex  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBISCF ubiquitin ligase complex  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  
NDEx NetworkFBXO39
Atlas of Cancer Signalling NetworkFBXO39
Wikipedia pathwaysFBXO39
Orthology - Evolution
OrthoDB162517
GeneTree (enSembl)ENSG00000177294
Phylogenetic Trees/Animal Genes : TreeFamFBXO39
HOVERGENQ8N4B4
HOGENOMQ8N4B4
Homologs : HomoloGeneFBXO39
Homology/Alignments : Family Browser (UCSC)FBXO39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO39
dbVarFBXO39
ClinVarFBXO39
1000_GenomesFBXO39 
Exome Variant ServerFBXO39
ExAC (Exome Aggregation Consortium)FBXO39 (select the gene name)
Genetic variants : HAPMAP162517
Genomic Variants (DGV)FBXO39 [DGVbeta]
DECIPHERFBXO39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO39 
Mutations
ICGC Data PortalFBXO39 
TCGA Data PortalFBXO39 
Broad Tumor PortalFBXO39
OASIS PortalFBXO39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO39
DgiDB (Drug Gene Interaction Database)FBXO39
DoCM (Curated mutations)FBXO39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO39 (select a term)
intoGenFBXO39
Cancer3DFBXO39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609106   
Orphanet
MedgenFBXO39
Genetic Testing Registry FBXO39
NextProtQ8N4B4 [Medical]
TSGene162517
GENETestsFBXO39
Huge Navigator FBXO39 [HugePedia]
snp3D : Map Gene to Disease162517
BioCentury BCIQFBXO39
ClinGenFBXO39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162517
Chemical/Pharm GKB GenePA134889729
Clinical trialFBXO39
Miscellaneous
canSAR (ICR)FBXO39 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO39
EVEXFBXO39
GoPubMedFBXO39
iHOPFBXO39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:41 CEST 2017

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