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FBXO40 (F-box protein 40)

Identity

Alias_symbol (synonym)KIAA1195
Fbx40
Other aliasFBX40
HGNC (Hugo) FBXO40
LocusID (NCBI) 51725
Atlas_Id 47036
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 121593323 and ends at 121630292 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO40   29816
Cards
Entrez_Gene (NCBI)FBXO40  51725  F-box protein 40
AliasesFBX40
GeneCards (Weizmann)FBXO40
Ensembl hg19 (Hinxton)ENSG00000163833 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163833 [Gene_View]  chr3:121593323-121630292 [Contig_View]  FBXO40 [Vega]
ICGC DataPortalENSG00000163833
TCGA cBioPortalFBXO40
AceView (NCBI)FBXO40
Genatlas (Paris)FBXO40
WikiGenes51725
SOURCE (Princeton)FBXO40
Genetics Home Reference (NIH)FBXO40
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO40  -     chr3:121593323-121630292 +  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO40  -     3q13.33   [Description]    (hg19-Feb_2009)
EnsemblFBXO40 - 3q13.33 [CytoView hg19]  FBXO40 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBIFBXO40 [Mapview hg19]  FBXO40 [Mapview hg38]
OMIM609107   
Gene and transcription
Genbank (Entrez)AB033021 AF163259 AF204674 AK314400 BC109275
RefSeq transcript (Entrez)NM_016298
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO40
Cluster EST : UnigeneHs.272564 [ NCBI ]
CGAP (NCI)Hs.272564
Alternative Splicing GalleryENSG00000163833
Gene ExpressionFBXO40 [ NCBI-GEO ]   FBXO40 [ EBI - ARRAY_EXPRESS ]   FBXO40 [ SEEK ]   FBXO40 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51725
GTEX Portal (Tissue expression)FBXO40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UH90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UH90
Splice isoforms : SwissVarQ9UH90
PhosPhoSitePlusQ9UH90
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    ZF_TRAF (PS50145)   
Domains : Interpro (EBI)F-box_dom    Fbxo30/Fbxo40    SIAH-type    TRAF-like    Znf_TRAF   
Domain families : Pfam (Sanger)F-box_4 (PF15966)    zf-TRAF_2 (PF15965)   
Domain families : Pfam (NCBI)pfam15966    pfam15965   
Conserved Domain (NCBI)FBXO40
DMDM Disease mutations51725
Blocks (Seattle)FBXO40
SuperfamilyQ9UH90
Human Protein AtlasENSG00000163833
Peptide AtlasQ9UH90
HPRD12368
IPIIPI00008203   IPI00384921   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH90
IntAct (EBI)Q9UH90
FunCoupENSG00000163833
BioGRIDFBXO40
STRING (EMBL)FBXO40
ZODIACFBXO40
Ontologies - Pathways
QuickGOQ9UH90
Ontology : AmiGOprotein polyubiquitination  molecular_function  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytoplasm  cytosol  zinc ion binding  muscle cell differentiation  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  molecular_function  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytoplasm  cytosol  zinc ion binding  muscle cell differentiation  ubiquitin protein ligase activity  
NDEx NetworkFBXO40
Atlas of Cancer Signalling NetworkFBXO40
Wikipedia pathwaysFBXO40
Orthology - Evolution
OrthoDB51725
GeneTree (enSembl)ENSG00000163833
Phylogenetic Trees/Animal Genes : TreeFamFBXO40
HOVERGENQ9UH90
HOGENOMQ9UH90
Homologs : HomoloGeneFBXO40
Homology/Alignments : Family Browser (UCSC)FBXO40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO40
dbVarFBXO40
ClinVarFBXO40
1000_GenomesFBXO40 
Exome Variant ServerFBXO40
ExAC (Exome Aggregation Consortium)FBXO40 (select the gene name)
Genetic variants : HAPMAP51725
Genomic Variants (DGV)FBXO40 [DGVbeta]
DECIPHERFBXO40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO40 
Mutations
ICGC Data PortalFBXO40 
TCGA Data PortalFBXO40 
Broad Tumor PortalFBXO40
OASIS PortalFBXO40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO40
DgiDB (Drug Gene Interaction Database)FBXO40
DoCM (Curated mutations)FBXO40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO40 (select a term)
intoGenFBXO40
Cancer3DFBXO40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609107   
Orphanet
MedgenFBXO40
Genetic Testing Registry FBXO40
NextProtQ9UH90 [Medical]
TSGene51725
GENETestsFBXO40
Target ValidationFBXO40
Huge Navigator FBXO40 [HugePedia]
snp3D : Map Gene to Disease51725
BioCentury BCIQFBXO40
ClinGenFBXO40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51725
Chemical/Pharm GKB GenePA134971542
Clinical trialFBXO40
Miscellaneous
canSAR (ICR)FBXO40 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO40
EVEXFBXO40
GoPubMedFBXO40
iHOPFBXO40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:37 CEST 2017

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