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FBXO42 (F-box protein 42)

Identity

Alias (NCBI)Fbx42
JFK
HGNC (Hugo) FBXO42
HGNC Alias symbKIAA1332
Fbx42
LocusID (NCBI) 54455
Atlas_Id 41064
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16246840 and ends at 16352480 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EPHA2 (1p36.13) / FBXO42 (1p36.13)FBXO42 (1p36.13) / FBXO42 (1p36.13)FBXO42 (1p36.13) / RUNX1 (21q22.12)
FBXO42 (1p36.13) / SHANK3 (22q13.33)HMGN4 (6p22.2) / FBXO42 (1p36.13)FBXO42 1p36.13 / RUNX1 21q22.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FBXO42   29249
Cards
Entrez_Gene (NCBI)FBXO42    F-box protein 42
AliasesFbx42; JFK
GeneCards (Weizmann)FBXO42
Ensembl hg19 (Hinxton)ENSG00000037637 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000037637 [Gene_View]  ENSG00000037637 [Sequence]  chr1:16246840-16352480 [Contig_View]  FBXO42 [Vega]
ICGC DataPortalENSG00000037637
TCGA cBioPortalFBXO42
AceView (NCBI)FBXO42
Genatlas (Paris)FBXO42
SOURCE (Princeton)FBXO42
Genetics Home Reference (NIH)FBXO42
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO42  -     chr1:16246840-16352480 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO42  -     1p36.13   [Description]    (hg19-Feb_2009)
GoldenPathFBXO42 - 1p36.13 [CytoView hg19]  FBXO42 - 1p36.13 [CytoView hg38]
ImmunoBaseENSG00000037637
Genome Data Viewer NCBIFBXO42 [Mapview hg19]  
OMIM609109   
Gene and transcription
Genbank (Entrez)AB037753 AK025059 AK055598 AK310671 AL833207
RefSeq transcript (Entrez)NM_018994
Consensus coding sequences : CCDS (NCBI)FBXO42
Gene ExpressionFBXO42 [ NCBI-GEO ]   FBXO42 [ EBI - ARRAY_EXPRESS ]   FBXO42 [ SEEK ]   FBXO42 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO42 [ Firebrowse - Broad ]
GenevisibleExpression of FBXO42 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54455
GTEX Portal (Tissue expression)FBXO42
Human Protein AtlasENSG00000037637-FBXO42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P3S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P3S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P3S6
PhosPhoSitePlusQ6P3S6
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box-like_dom_sf    F-box_dom    Kelch-typ_b-propeller    Kelch_2   
Domain families : Pfam (Sanger)F-box-like (PF12937)    Kelch_2 (PF07646)   
Domain families : Pfam (NCBI)pfam12937    pfam07646   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO42
SuperfamilyQ6P3S6
AlphaFold pdb e-kbQ6P3S6   
Human Protein Atlas [tissue]ENSG00000037637-FBXO42 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6P3S6
IntAct (EBI)Q6P3S6
BioGRIDFBXO42
STRING (EMBL)FBXO42
ZODIACFBXO42
Ontologies - Pathways
QuickGOQ6P3S6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFBXO42
Atlas of Cancer Signalling NetworkFBXO42
Wikipedia pathwaysFBXO42
Orthology - Evolution
OrthoDB54455
GeneTree (enSembl)ENSG00000037637
Phylogenetic Trees/Animal Genes : TreeFamFBXO42
Homologs : HomoloGeneFBXO42
Homology/Alignments : Family Browser (UCSC)FBXO42
Gene fusions - Rearrangements
Fusion : MitelmanFBXO42/RUNX1 [1p36.13/21q22.12]  
Fusion : QuiverFBXO42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO42
dbVarFBXO42
ClinVarFBXO42
MonarchFBXO42
1000_GenomesFBXO42 
Exome Variant ServerFBXO42
GNOMAD BrowserENSG00000037637
Varsome BrowserFBXO42
ACMGFBXO42 variants
VarityQ6P3S6
Genomic Variants (DGV)FBXO42 [DGVbeta]
DECIPHERFBXO42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO42 
Mutations
ICGC Data PortalFBXO42 
TCGA Data PortalFBXO42 
Broad Tumor PortalFBXO42
OASIS PortalFBXO42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO42  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFBXO42
Mutations and Diseases : HGMDFBXO42
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFBXO42
DgiDB (Drug Gene Interaction Database)FBXO42
DoCM (Curated mutations)FBXO42
CIViC (Clinical Interpretations of Variants in Cancer)FBXO42
Cancer3DFBXO42
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609109   
Orphanet
DisGeNETFBXO42
MedgenFBXO42
Genetic Testing Registry FBXO42
NextProtQ6P3S6 [Medical]
GENETestsFBXO42
Target ValidationFBXO42
Huge Navigator FBXO42 [HugePedia]
ClinGenFBXO42
Clinical trials, drugs, therapy
MyCancerGenomeFBXO42
Protein Interactions : CTDFBXO42
Pharm GKB GenePA134951560
PharosQ6P3S6
Clinical trialFBXO42
Miscellaneous
canSAR (ICR)FBXO42
HarmonizomeFBXO42
DataMed IndexFBXO42
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFBXO42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:09:10 CEST 2021

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