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FBXO42 (F-box protein 42)

Identity

Alias_symbol (synonym)KIAA1332
Fbx42
Other aliasJFK
HGNC (Hugo) FBXO42
LocusID (NCBI) 54455
Atlas_Id 41064
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16573335 and ends at 16678986 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EPHA2 (1p36.13) / FBXO42 (1p36.13)FBXO42 (1p36.13) / FBXO42 (1p36.13)FBXO42 (1p36.13) / RUNX1 (21q22.12)
FBXO42 (1p36.13) / SHANK3 (22q13.33)HMGN4 (6p22.2) / FBXO42 (1p36.13)FBXO42 1p36.13 / RUNX1 21q22.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO42   29249
Cards
Entrez_Gene (NCBI)FBXO42  54455  F-box protein 42
AliasesFbx42; JFK
GeneCards (Weizmann)FBXO42
Ensembl hg19 (Hinxton)ENSG00000037637 [Gene_View]  chr1:16573335-16678986 [Contig_View]  FBXO42 [Vega]
Ensembl hg38 (Hinxton)ENSG00000037637 [Gene_View]  chr1:16573335-16678986 [Contig_View]  FBXO42 [Vega]
ICGC DataPortalENSG00000037637
TCGA cBioPortalFBXO42
AceView (NCBI)FBXO42
Genatlas (Paris)FBXO42
WikiGenes54455
SOURCE (Princeton)FBXO42
Genetics Home Reference (NIH)FBXO42
Genomic and cartography
GoldenPath hg19 (UCSC)FBXO42  -     chr1:16573335-16678986 -  1p36.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXO42  -     1p36.13   [Description]    (hg38-Dec_2013)
EnsemblFBXO42 - 1p36.13 [CytoView hg19]  FBXO42 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIFBXO42 [Mapview hg19]  FBXO42 [Mapview hg38]
OMIM609109   
Gene and transcription
Genbank (Entrez)AB037753 AK025059 AK055598 AK310671 AL833207
RefSeq transcript (Entrez)NM_018994
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)FBXO42
Cluster EST : UnigeneHs.522384 [ NCBI ]
CGAP (NCI)Hs.522384
Alternative Splicing GalleryENSG00000037637
Gene ExpressionFBXO42 [ NCBI-GEO ]   FBXO42 [ EBI - ARRAY_EXPRESS ]   FBXO42 [ SEEK ]   FBXO42 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54455
GTEX Portal (Tissue expression)FBXO42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P3S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P3S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P3S6
Splice isoforms : SwissVarQ6P3S6
PhosPhoSitePlusQ6P3S6
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom    Kelch-typ_b-propeller    Kelch_2   
Domain families : Pfam (Sanger)F-box-like (PF12937)    Kelch_2 (PF07646)   
Domain families : Pfam (NCBI)pfam12937    pfam07646   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO42
DMDM Disease mutations54455
Blocks (Seattle)FBXO42
SuperfamilyQ6P3S6
Human Protein AtlasENSG00000037637
Peptide AtlasQ6P3S6
IPIIPI00011371   IPI00642988   
Protein Interaction databases
DIP (DOE-UCLA)Q6P3S6
IntAct (EBI)Q6P3S6
FunCoupENSG00000037637
BioGRIDFBXO42
STRING (EMBL)FBXO42
ZODIACFBXO42
Ontologies - Pathways
QuickGOQ6P3S6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFBXO42
Atlas of Cancer Signalling NetworkFBXO42
Wikipedia pathwaysFBXO42
Orthology - Evolution
OrthoDB54455
GeneTree (enSembl)ENSG00000037637
Phylogenetic Trees/Animal Genes : TreeFamFBXO42
HOVERGENQ6P3S6
HOGENOMQ6P3S6
Homologs : HomoloGeneFBXO42
Homology/Alignments : Family Browser (UCSC)FBXO42
Gene fusions - Rearrangements
Fusion : MitelmanFBXO42/RUNX1 [1p36.13/21q22.12]  
Fusion: TCGAFBXO42 1p36.13 RUNX1 21q22.12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO42
dbVarFBXO42
ClinVarFBXO42
1000_GenomesFBXO42 
Exome Variant ServerFBXO42
ExAC (Exome Aggregation Consortium)FBXO42 (select the gene name)
Genetic variants : HAPMAP54455
Genomic Variants (DGV)FBXO42 [DGVbeta]
DECIPHER (Syndromes)1:16573335-16678986  ENSG00000037637
CONAN: Copy Number AnalysisFBXO42 
Mutations
ICGC Data PortalFBXO42 
TCGA Data PortalFBXO42 
Broad Tumor PortalFBXO42
OASIS PortalFBXO42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO42
DgiDB (Drug Gene Interaction Database)FBXO42
DoCM (Curated mutations)FBXO42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO42 (select a term)
intoGenFBXO42
Cancer3DFBXO42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609109   
Orphanet
MedgenFBXO42
Genetic Testing Registry FBXO42
NextProtQ6P3S6 [Medical]
TSGene54455
GENETestsFBXO42
Huge Navigator FBXO42 [HugePedia]
snp3D : Map Gene to Disease54455
BioCentury BCIQFBXO42
ClinGenFBXO42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54455
Chemical/Pharm GKB GenePA134951560
Clinical trialFBXO42
Miscellaneous
canSAR (ICR)FBXO42 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO42
EVEXFBXO42
GoPubMedFBXO42
iHOPFBXO42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:49 CET 2017

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