Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FBXO44 (F-box protein 44)

Identity

Alias_symbol (synonym)FBX30
FBG3
MGC14140
Fbxo6a
Fbx44
Other aliasFBX6A
HGNC (Hugo) FBXO44
LocusID (NCBI) 93611
Atlas_Id 63334
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 11654857 and ends at 11663327 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBXO44 (1p36.22) / MTSS1L (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO44   24847
Cards
Entrez_Gene (NCBI)FBXO44  93611  F-box protein 44
AliasesFBG3; FBX30; FBX6A; Fbx44; 
Fbxo6a
GeneCards (Weizmann)FBXO44
Ensembl hg19 (Hinxton)ENSG00000132879 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132879 [Gene_View]  chr1:11654857-11663327 [Contig_View]  FBXO44 [Vega]
ICGC DataPortalENSG00000132879
TCGA cBioPortalFBXO44
AceView (NCBI)FBXO44
Genatlas (Paris)FBXO44
WikiGenes93611
SOURCE (Princeton)FBXO44
Genetics Home Reference (NIH)FBXO44
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO44  -     chr1:11654857-11663327 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO44  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblFBXO44 - 1p36.22 [CytoView hg19]  FBXO44 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIFBXO44 [Mapview hg19]  FBXO44 [Mapview hg38]
OMIM609111   
Gene and transcription
Genbank (Entrez)AK055344 AK293721 AK294053 AK296025 AK301418
RefSeq transcript (Entrez)NM_001014765 NM_001304790 NM_001304791 NM_001330355 NM_033182 NM_183412 NM_183413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO44
Cluster EST : UnigeneHs.556006 [ NCBI ]
CGAP (NCI)Hs.556006
Alternative Splicing GalleryENSG00000132879
Gene ExpressionFBXO44 [ NCBI-GEO ]   FBXO44 [ EBI - ARRAY_EXPRESS ]   FBXO44 [ SEEK ]   FBXO44 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93611
GTEX Portal (Tissue expression)FBXO44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4M3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4M3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4M3
Splice isoforms : SwissVarQ9H4M3
PhosPhoSitePlusQ9H4M3
Domaine pattern : Prosite (Expaxy)FBA (PS51114)    FBOX (PS50181)   
Domains : Interpro (EBI)F-box-assoc_dom    F-box_dom    Galactose-bd-like   
Domain families : Pfam (Sanger)F-box-like (PF12937)    FBA (PF04300)   
Domain families : Pfam (NCBI)pfam12937    pfam04300   
Domain families : Smart (EMBL)FBA (SM01198)  FBOX (SM00256)  
Conserved Domain (NCBI)FBXO44
DMDM Disease mutations93611
Blocks (Seattle)FBXO44
PDB (SRS)3WSO    5B4N   
PDB (PDBSum)3WSO    5B4N   
PDB (IMB)3WSO    5B4N   
PDB (RSDB)3WSO    5B4N   
Structural Biology KnowledgeBase3WSO    5B4N   
SCOP (Structural Classification of Proteins)3WSO    5B4N   
CATH (Classification of proteins structures)3WSO    5B4N   
SuperfamilyQ9H4M3
Human Protein AtlasENSG00000132879
Peptide AtlasQ9H4M3
HPRD16445
IPIIPI00414844   IPI00013239   IPI00640153   IPI00647771   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4M3
IntAct (EBI)Q9H4M3
FunCoupENSG00000132879
BioGRIDFBXO44
STRING (EMBL)FBXO44
ZODIACFBXO44
Ontologies - Pathways
QuickGOQ9H4M3
Ontology : AmiGOprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  SCF ubiquitin ligase complex  
Ontology : EGO-EBIprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  SCF ubiquitin ligase complex  
NDEx NetworkFBXO44
Atlas of Cancer Signalling NetworkFBXO44
Wikipedia pathwaysFBXO44
Orthology - Evolution
OrthoDB93611
GeneTree (enSembl)ENSG00000132879
Phylogenetic Trees/Animal Genes : TreeFamFBXO44
HOVERGENQ9H4M3
HOGENOMQ9H4M3
Homologs : HomoloGeneFBXO44
Homology/Alignments : Family Browser (UCSC)FBXO44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO44
dbVarFBXO44
ClinVarFBXO44
1000_GenomesFBXO44 
Exome Variant ServerFBXO44
ExAC (Exome Aggregation Consortium)FBXO44 (select the gene name)
Genetic variants : HAPMAP93611
Genomic Variants (DGV)FBXO44 [DGVbeta]
DECIPHERFBXO44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO44 
Mutations
ICGC Data PortalFBXO44 
TCGA Data PortalFBXO44 
Broad Tumor PortalFBXO44
OASIS PortalFBXO44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO44
DgiDB (Drug Gene Interaction Database)FBXO44
DoCM (Curated mutations)FBXO44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO44 (select a term)
intoGenFBXO44
Cancer3DFBXO44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609111   
Orphanet
MedgenFBXO44
Genetic Testing Registry FBXO44
NextProtQ9H4M3 [Medical]
TSGene93611
GENETestsFBXO44
Target ValidationFBXO44
Huge Navigator FBXO44 [HugePedia]
snp3D : Map Gene to Disease93611
BioCentury BCIQFBXO44
ClinGenFBXO44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93611
Chemical/Pharm GKB GenePA134863106
Clinical trialFBXO44
Miscellaneous
canSAR (ICR)FBXO44 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO44
EVEXFBXO44
GoPubMedFBXO44
iHOPFBXO44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:49:03 CEST 2017

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