Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FBXO46 (F-box protein 46)

Identity

Alias_namesFBXO34L
F-box only protein 34-like
Alias_symbol (synonym)20D7-FC4
Fbx46
Other alias
HGNC (Hugo) FBXO46
LocusID (NCBI) 23403
Atlas_Id 47311
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45710629 and ends at 45730893 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBXO46 (19q13.32) / SNRPD2 (19q13.32)FBXO46 (19q13.32) / SYMPK (19q13.32)FBXO46 19q13.32 / SYMPK 19q13.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO46   25069
Cards
Entrez_Gene (NCBI)FBXO46  23403  F-box protein 46
Aliases20D7-FC4; FBXO34L; Fbx46
GeneCards (Weizmann)FBXO46
Ensembl hg19 (Hinxton)ENSG00000177051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177051 [Gene_View]  chr19:45710629-45730893 [Contig_View]  FBXO46 [Vega]
ICGC DataPortalENSG00000177051
TCGA cBioPortalFBXO46
AceView (NCBI)FBXO46
Genatlas (Paris)FBXO46
WikiGenes23403
SOURCE (Princeton)FBXO46
Genetics Home Reference (NIH)FBXO46
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO46  -     chr19:45710629-45730893 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO46  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblFBXO46 - 19q13.32 [CytoView hg19]  FBXO46 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIFBXO46 [Mapview hg19]  FBXO46 [Mapview hg38]
OMIM609117   
Gene and transcription
Genbank (Entrez)BC008046 BC013570 BC021978 BC046245 Y10936
RefSeq transcript (Entrez)NM_001080469 NM_001329632 NM_001329633 NM_001329634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO46
Cluster EST : UnigeneHs.128702 [ NCBI ]
CGAP (NCI)Hs.128702
Alternative Splicing GalleryENSG00000177051
Gene ExpressionFBXO46 [ NCBI-GEO ]   FBXO46 [ EBI - ARRAY_EXPRESS ]   FBXO46 [ SEEK ]   FBXO46 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23403
GTEX Portal (Tissue expression)FBXO46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJ61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJ61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJ61
Splice isoforms : SwissVarQ6PJ61
PhosPhoSitePlusQ6PJ61
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO46
DMDM Disease mutations23403
Blocks (Seattle)FBXO46
SuperfamilyQ6PJ61
Human Protein AtlasENSG00000177051
Peptide AtlasQ6PJ61
IPIIPI00419450   IPI00015193   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJ61
IntAct (EBI)Q6PJ61
FunCoupENSG00000177051
BioGRIDFBXO46
STRING (EMBL)FBXO46
ZODIACFBXO46
Ontologies - Pathways
QuickGOQ6PJ61
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFBXO46
Atlas of Cancer Signalling NetworkFBXO46
Wikipedia pathwaysFBXO46
Orthology - Evolution
OrthoDB23403
GeneTree (enSembl)ENSG00000177051
Phylogenetic Trees/Animal Genes : TreeFamFBXO46
HOVERGENQ6PJ61
HOGENOMQ6PJ61
Homologs : HomoloGeneFBXO46
Homology/Alignments : Family Browser (UCSC)FBXO46
Gene fusions - Rearrangements
Fusion : MitelmanFBXO46/SYMPK [19q13.32/19q13.32]  
Fusion: TCGAFBXO46 19q13.32 SYMPK 19q13.32 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO46
dbVarFBXO46
ClinVarFBXO46
1000_GenomesFBXO46 
Exome Variant ServerFBXO46
ExAC (Exome Aggregation Consortium)FBXO46 (select the gene name)
Genetic variants : HAPMAP23403
Genomic Variants (DGV)FBXO46 [DGVbeta]
DECIPHERFBXO46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO46 
Mutations
ICGC Data PortalFBXO46 
TCGA Data PortalFBXO46 
Broad Tumor PortalFBXO46
OASIS PortalFBXO46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO46
DgiDB (Drug Gene Interaction Database)FBXO46
DoCM (Curated mutations)FBXO46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO46 (select a term)
intoGenFBXO46
Cancer3DFBXO46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609117   
Orphanet
MedgenFBXO46
Genetic Testing Registry FBXO46
NextProtQ6PJ61 [Medical]
TSGene23403
GENETestsFBXO46
Target ValidationFBXO46
Huge Navigator FBXO46 [HugePedia]
snp3D : Map Gene to Disease23403
BioCentury BCIQFBXO46
ClinGenFBXO46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23403
Chemical/Pharm GKB GenePA134985344
Clinical trialFBXO46
Miscellaneous
canSAR (ICR)FBXO46 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO46
EVEXFBXO46
GoPubMedFBXO46
iHOPFBXO46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:01:04 CEST 2017

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