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FBXO47 (F-box protein 47)

Identity

Other alias-
HGNC (Hugo) FBXO47
LocusID (NCBI) 494188
Atlas_Id 46562
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 37092685 and ends at 37123655 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CWC25 (17q12) / FBXO47 (17q12)CWC25 17q12 / FBXO47 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO47   31969
Cards
Entrez_Gene (NCBI)FBXO47  494188  F-box protein 47
Aliases
GeneCards (Weizmann)FBXO47
Ensembl hg19 (Hinxton)ENSG00000204952 [Gene_View]  chr17:37092685-37123655 [Contig_View]  FBXO47 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204952 [Gene_View]  chr17:37092685-37123655 [Contig_View]  FBXO47 [Vega]
ICGC DataPortalENSG00000204952
TCGA cBioPortalFBXO47
AceView (NCBI)FBXO47
Genatlas (Paris)FBXO47
WikiGenes494188
SOURCE (Princeton)FBXO47
Genetics Home Reference (NIH)FBXO47
Genomic and cartography
GoldenPath hg19 (UCSC)FBXO47  -     chr17:37092685-37123655 -  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXO47  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblFBXO47 - 17q12 [CytoView hg19]  FBXO47 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIFBXO47 [Mapview hg19]  FBXO47 [Mapview hg38]
OMIM609498   
Gene and transcription
Genbank (Entrez)AY700575 BC140879 BC140880 DB340247
RefSeq transcript (Entrez)NM_001008777
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)FBXO47
Cluster EST : UnigeneHs.549536 [ NCBI ]
CGAP (NCI)Hs.549536
Alternative Splicing GalleryENSG00000204952
Gene ExpressionFBXO47 [ NCBI-GEO ]   FBXO47 [ EBI - ARRAY_EXPRESS ]   FBXO47 [ SEEK ]   FBXO47 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494188
GTEX Portal (Tissue expression)FBXO47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MNV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MNV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MNV8
Splice isoforms : SwissVarQ5MNV8
PhosPhoSitePlusQ5MNV8
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom   
Domain families : Pfam (Sanger)F-box (PF00646)   
Domain families : Pfam (NCBI)pfam00646   
Conserved Domain (NCBI)FBXO47
DMDM Disease mutations494188
Blocks (Seattle)FBXO47
SuperfamilyQ5MNV8
Human Protein AtlasENSG00000204952
Peptide AtlasQ5MNV8
HPRD16886
IPIIPI00550126   
Protein Interaction databases
DIP (DOE-UCLA)Q5MNV8
IntAct (EBI)Q5MNV8
FunCoupENSG00000204952
BioGRIDFBXO47
STRING (EMBL)FBXO47
ZODIACFBXO47
Ontologies - Pathways
QuickGOQ5MNV8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFBXO47
Atlas of Cancer Signalling NetworkFBXO47
Wikipedia pathwaysFBXO47
Orthology - Evolution
OrthoDB494188
GeneTree (enSembl)ENSG00000204952
Phylogenetic Trees/Animal Genes : TreeFamFBXO47
HOVERGENQ5MNV8
HOGENOMQ5MNV8
Homologs : HomoloGeneFBXO47
Homology/Alignments : Family Browser (UCSC)FBXO47
Gene fusions - Rearrangements
Fusion: TCGACWC25 17q12 FBXO47 17q12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO47
dbVarFBXO47
ClinVarFBXO47
1000_GenomesFBXO47 
Exome Variant ServerFBXO47
ExAC (Exome Aggregation Consortium)FBXO47 (select the gene name)
Genetic variants : HAPMAP494188
Genomic Variants (DGV)FBXO47 [DGVbeta]
DECIPHER (Syndromes)17:37092685-37123655  ENSG00000204952
CONAN: Copy Number AnalysisFBXO47 
Mutations
ICGC Data PortalFBXO47 
TCGA Data PortalFBXO47 
Broad Tumor PortalFBXO47
OASIS PortalFBXO47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO47
DgiDB (Drug Gene Interaction Database)FBXO47
DoCM (Curated mutations)FBXO47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO47 (select a term)
intoGenFBXO47
Cancer3DFBXO47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609498   
Orphanet
MedgenFBXO47
Genetic Testing Registry FBXO47
NextProtQ5MNV8 [Medical]
TSGene494188
GENETestsFBXO47
Huge Navigator FBXO47 [HugePedia]
snp3D : Map Gene to Disease494188
BioCentury BCIQFBXO47
ClinGenFBXO47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494188
Chemical/Pharm GKB GenePA162388157
Clinical trialFBXO47
Miscellaneous
canSAR (ICR)FBXO47 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO47
EVEXFBXO47
GoPubMedFBXO47
iHOPFBXO47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:49 CET 2017

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