Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FBXO48 (F-box protein 48)

Identity

Other alias-
HGNC (Hugo) FBXO48
LocusID (NCBI) 554251
Atlas_Id 63335
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 68462371 and ends at 68467317 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO48   33857
Cards
Entrez_Gene (NCBI)FBXO48  554251  F-box protein 48
Aliases
GeneCards (Weizmann)FBXO48
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:68462371-68467317 [Contig_View]  FBXO48 [Vega]
TCGA cBioPortalFBXO48
AceView (NCBI)FBXO48
Genatlas (Paris)FBXO48
WikiGenes554251
SOURCE (Princeton)FBXO48
Genetics Home Reference (NIH)FBXO48
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO48  -     chr2:68462371-68467317 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO48  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblFBXO48 - 2p13.3 [CytoView hg19]  FBXO48 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIFBXO48 [Mapview hg19]  FBXO48 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC089423 BG435927 CN257687 DB303415 DQ904332
RefSeq transcript (Entrez)NM_001024680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO48
Cluster EST : UnigeneHs.164117 [ NCBI ]
CGAP (NCI)Hs.164117
Gene ExpressionFBXO48 [ NCBI-GEO ]   FBXO48 [ EBI - ARRAY_EXPRESS ]   FBXO48 [ SEEK ]   FBXO48 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO48 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554251
GTEX Portal (Tissue expression)FBXO48
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5FWF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5FWF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5FWF7
Splice isoforms : SwissVarQ5FWF7
PhosPhoSitePlusQ5FWF7
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box_dom   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Domain families : Smart (EMBL)FBOX (SM00256)  
Conserved Domain (NCBI)FBXO48
DMDM Disease mutations554251
Blocks (Seattle)FBXO48
SuperfamilyQ5FWF7
Peptide AtlasQ5FWF7
HPRD18694
IPIIPI00552557   
Protein Interaction databases
DIP (DOE-UCLA)Q5FWF7
IntAct (EBI)Q5FWF7
BioGRIDFBXO48
STRING (EMBL)FBXO48
ZODIACFBXO48
Ontologies - Pathways
QuickGOQ5FWF7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFBXO48
Atlas of Cancer Signalling NetworkFBXO48
Wikipedia pathwaysFBXO48
Orthology - Evolution
OrthoDB554251
Phylogenetic Trees/Animal Genes : TreeFamFBXO48
HOVERGENQ5FWF7
HOGENOMQ5FWF7
Homologs : HomoloGeneFBXO48
Homology/Alignments : Family Browser (UCSC)FBXO48
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO48 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO48
dbVarFBXO48
ClinVarFBXO48
1000_GenomesFBXO48 
Exome Variant ServerFBXO48
ExAC (Exome Aggregation Consortium)FBXO48 (select the gene name)
Genetic variants : HAPMAP554251
Genomic Variants (DGV)FBXO48 [DGVbeta]
DECIPHERFBXO48 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO48 
Mutations
ICGC Data PortalFBXO48 
TCGA Data PortalFBXO48 
Broad Tumor PortalFBXO48
OASIS PortalFBXO48 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO48  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO48
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO48
DgiDB (Drug Gene Interaction Database)FBXO48
DoCM (Curated mutations)FBXO48 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO48 (select a term)
intoGenFBXO48
Cancer3DFBXO48(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFBXO48
Genetic Testing Registry FBXO48
NextProtQ5FWF7 [Medical]
TSGene554251
GENETestsFBXO48
Target ValidationFBXO48
Huge Navigator FBXO48 [HugePedia]
snp3D : Map Gene to Disease554251
BioCentury BCIQFBXO48
ClinGenFBXO48
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554251
Chemical/Pharm GKB GenePA162388158
Clinical trialFBXO48
Miscellaneous
canSAR (ICR)FBXO48 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO48
EVEXFBXO48
GoPubMedFBXO48
iHOPFBXO48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:49:04 CEST 2017

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