Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FBXO9 (F-box protein 9)

Identity

Alias (NCBI)FBX9
NY-REN-57
VCIA1
dJ341E18.2
HGNC (Hugo) FBXO9
HGNC Alias symbFBX9
NY-REN-57
HGNC Previous nameF-box only protein 9
LocusID (NCBI) 26268
Atlas_Id 63337
Location 6p12.1  [Link to chromosome band 6p12]
Location_base_pair Starts at 53064998 and ends at 53100872 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARPC5 (1q25.3) / FBXO9 (6p12.1)E2F3 (6p22.3) / FBXO9 (6p12.1)FBXO9 (6p12.1) / FASN (17q25.3)
FBXO9 (6p12.1) / FBXO9 (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;6)(p12;p21) NFKBIE/FBXO9
t(6;6)(p12;p22) E2F3/FBXO9

External links

Nomenclature
HGNC (Hugo)FBXO9   13588
Cards
Entrez_Gene (NCBI)FBXO9    F-box protein 9
AliasesFBX9; NY-REN-57; VCIA1; dJ341E18.2
GeneCards (Weizmann)FBXO9
Ensembl hg19 (Hinxton)ENSG00000112146 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112146 [Gene_View]  ENSG00000112146 [Sequence]  chr6:53064998-53100872 [Contig_View]  FBXO9 [Vega]
ICGC DataPortalENSG00000112146
TCGA cBioPortalFBXO9
AceView (NCBI)FBXO9
Genatlas (Paris)FBXO9
SOURCE (Princeton)FBXO9
Genetics Home Reference (NIH)FBXO9
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO9  -     chr6:53064998-53100872 +  6p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO9  -     6p12.1   [Description]    (hg19-Feb_2009)
GoldenPathFBXO9 - 6p12.1 [CytoView hg19]  FBXO9 - 6p12.1 [CytoView hg38]
ImmunoBaseENSG00000112146
genome Data Viewer NCBIFBXO9 [Mapview hg19]  
OMIM609091   
Gene and transcription
Genbank (Entrez)AA132361 AA890006 AB209833 AF174597 AF176704
RefSeq transcript (Entrez)NM_012347 NM_033480 NM_033481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO9
Alternative Splicing GalleryENSG00000112146
Gene ExpressionFBXO9 [ NCBI-GEO ]   FBXO9 [ EBI - ARRAY_EXPRESS ]   FBXO9 [ SEEK ]   FBXO9 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO9 [ Firebrowse - Broad ]
GenevisibleExpression of FBXO9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26268
GTEX Portal (Tissue expression)FBXO9
Human Protein AtlasENSG00000112146-FBXO9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK97
Splice isoforms : SwissVarQ9UK97
PhosPhoSitePlusQ9UK97
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)   
Domains : Interpro (EBI)F-box-like_dom_sf    F-box_dom    MIT_dom_sf   
Domain families : Pfam (Sanger)F-box-like (PF12937)   
Domain families : Pfam (NCBI)pfam12937   
Conserved Domain (NCBI)FBXO9
Blocks (Seattle)FBXO9
SuperfamilyQ9UK97
Human Protein Atlas [tissue]ENSG00000112146-FBXO9 [tissue]
Peptide AtlasQ9UK97
HPRD16434
IPIIPI00296788   IPI00470655   IPI00470662   IPI00946951   IPI00947412   IPI00946621   IPI00946968   IPI00947143   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK97
IntAct (EBI)Q9UK97
BioGRIDFBXO9
STRING (EMBL)FBXO9
ZODIACFBXO9
Ontologies - Pathways
QuickGOQ9UK97
Ontology : AmiGOubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  protein binding  cytoplasm  cytoplasm  cytosol  protein ubiquitination  protein ubiquitination  SCF ubiquitin ligase complex  SCF ubiquitin ligase complex  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  regulation of TOR signaling  post-translational protein modification  innate immune response  fat cell differentiation  
Ontology : EGO-EBIubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  protein binding  cytoplasm  cytoplasm  cytosol  protein ubiquitination  protein ubiquitination  SCF ubiquitin ligase complex  SCF ubiquitin ligase complex  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  regulation of TOR signaling  post-translational protein modification  innate immune response  fat cell differentiation  
NDEx NetworkFBXO9
Atlas of Cancer Signalling NetworkFBXO9
Wikipedia pathwaysFBXO9
Orthology - Evolution
OrthoDB26268
GeneTree (enSembl)ENSG00000112146
Phylogenetic Trees/Animal Genes : TreeFamFBXO9
HOGENOMQ9UK97
Homologs : HomoloGeneFBXO9
Homology/Alignments : Family Browser (UCSC)FBXO9
Gene fusions - Rearrangements
Fusion : QuiverFBXO9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO9 [hg38]
dbVarFBXO9
ClinVarFBXO9
MonarchFBXO9
1000_GenomesFBXO9 
Exome Variant ServerFBXO9
GNOMAD BrowserENSG00000112146
Varsome BrowserFBXO9
Genomic Variants (DGV)FBXO9 [DGVbeta]
DECIPHERFBXO9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO9 
Mutations
ICGC Data PortalFBXO9 
TCGA Data PortalFBXO9 
Broad Tumor PortalFBXO9
OASIS PortalFBXO9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFBXO9
Mutations and Diseases : HGMDFBXO9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO9
DgiDB (Drug Gene Interaction Database)FBXO9
DoCM (Curated mutations)FBXO9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO9 (select a term)
intoGenFBXO9
Cancer3DFBXO9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609091   
Orphanet
DisGeNETFBXO9
MedgenFBXO9
Genetic Testing Registry FBXO9
NextProtQ9UK97 [Medical]
GENETestsFBXO9
Target ValidationFBXO9
Huge Navigator FBXO9 [HugePedia]
ClinGenFBXO9
Clinical trials, drugs, therapy
MyCancerGenomeFBXO9
Protein Interactions : CTD
Pharm GKB GenePA28049
Clinical trialFBXO9
Miscellaneous
canSAR (ICR)FBXO9 (select the gene name)
HarmonizomeFBXO9
DataMed IndexFBXO9
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO9
EVEXFBXO9
GoPubMedFBXO9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:54:29 CET 2020
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