Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FBXW7 (F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase)

Identity

Other namesAGO
CDC4
FBW6
FBW7
FBX30
FBXO30
FBXW6
SEL-10
SEL10
hAgo
hCdc4
HGNC (Hugo) FBXW7
LocusID (NCBI) 55294
Location 4q31.3
Location_base_pair Starts at 153242410 and ends at 153303664 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FBXW7   16712
Entrez_Gene (NCBI)FBXW7  55294  F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
Cards
GeneCards (Weizmann)FBXW7
Ensembl (Hinxton)ENSG00000109670 [Gene_View]  chr4:153242410-153303664 [Contig_View]  FBXW7 [Vega]
AceView (NCBI)FBXW7
Genatlas (Paris)FBXW7
SOURCE (Stanford)NM_001013415 NM_001257069 NM_018315 NM_033632
Genomic and cartography
GoldenPath (UCSC)FBXW7  -  4q31.3   chr4:153242410-153303664 -  4q31.3   [Description]    (hg19-Feb_2009)
EnsemblFBXW7 - 4q31.3 [CytoView]
Mapping of homologs : NCBIFBXW7 [Mapview]
OMIM606278   
Gene and transcription
Genbank (Entrez)AB209725 AF383178 AF411971 AF411972 AI598129
RefSeq transcript (SRS)NM_001013415 NM_001257069 NM_018315 NM_033632
RefSeq transcript (Entrez)NM_001013415 NM_001257069 NM_018315 NM_033632
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NG_029466 NT_016354 NW_001838921 NW_004078021
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_029466 NT_016354 NW_001838921 NW_004078021
Consensus coding sequences : CCDS (NCBI)FBXW7
Cluster EST : UnigeneHs.717081 [ SRS ] Hs.717081 [ NCBI ]
CGAP (NCI)Hs.717081
Alternative Splicing : Fast-db (Paris)GSHG0023591
Alternative Splicing GalleryENSG00000109670
Gene ExpressionFBXW7 [ NCBI-GEO ]   FBXW7 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969H0 (SRS) Q969H0 (Uniprot)
NextProtQ969H0
With graphics : InterProQ969H0
Splice isoforms : SwissVarQ969H0(Swissvar)
Domaine pattern : Prosite (SRS)FBOX (PS50181)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (SRS)F-box_dom_cyclin-like    G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domains : Interpro (EBI)F-box_dom_cyclin-like    G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Related proteins : CluSTrQ969H0
Domain families : Pfam (SRS)WD40 (PF00400)   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)FBOX (SM00256)  WD40 (SM00320)  
DMDM55294
Blocks (Seattle)Q969H0
PDB (SRS)2OVP    2OVQ    2OVR   
PDB (PDBSum)2OVP    2OVQ    2OVR   
PDB (IMB)2OVP    2OVQ    2OVR   
PDB (RSDB)2OVP    2OVQ    2OVR   
Human Protein AtlasENSG00000109670
HPRD05888
IPIIPI00056349   IPI00059165   IPI00402151   IPI00075075   IPI01010101   
Protein Interaction databases
DIP (DOE-UCLA)Q969H0
IntAct (EBI)Q969H0
FunCoupENSG00000109670
REACTOMEFBXW7
Protein Interaction Database55294
BioGRIDFBXW7
InParanoidQ969H0
Interologous Interaction database Q969H0
IntegromeDBFBXW7
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FBXW7
SNP (GeneSNP Utah)FBXW7
SNP : HGBaseFBXW7
Genetic variants : HAPMAPFBXW7
Cancer Gene: CensusFBXW7 
Somatic Mutations in Cancer : COSMICFBXW7 
CONAN: Copy Number AnalysisFBXW7 
Mutations and Diseases : HGMDFBXW7
OMIM606278   
GENETests606278   
Disease Genetic AssociationFBXW7
Huge Navigator FBXW7 [HugePedia]  FBXW7 [HugeCancerGEM]
Genomic VariantsFBXW7  FBXW7 [DGVbeta]
snp3D : Map Gene to Disease55294
General knowledge
Homologs : HomoloGeneFBXW7
Homology/Alignments : Family Browser (UCSC)FBXW7
Phylogenetic Trees/Animal Genes : TreeFamFBXW7
Chemical/Protein Interactions : CTD55294
Chemical/Pharm GKB GenePA28054
Drug Sensitivity FBXW7
Clinical trialFBXW7
Cancer Resource (Charite)ENSG00000109670
Ontology : AmiGOvasculature development  sequence-specific DNA binding transcription factor activity  protein binding  nucleoplasm  nucleoplasm  nucleolus  nucleolus  endoplasmic reticulum  Golgi apparatus  response to DNA damage stimulus  sister chromatid cohesion  Notch signaling pathway  negative regulation of triglyceride biosynthetic process  regulation of lipid storage  protein ubiquitination  SCF ubiquitin ligase complex  virus-host interaction  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  negative regulation of DNA endoreduplication  regulation of protein localization  cellular response to UV  protein complex  positive regulation of epidermal growth factor-activated receptor activity  negative regulation of Notch signaling pathway  protein stabilization  lipid homeostasis  positive regulation of ERK1 and ERK2 cascade  positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  negative regulation of hepatocyte proliferation  negative regulation of SREBP signaling pathway  
Ontology : EGO-EBIvasculature development  sequence-specific DNA binding transcription factor activity  protein binding  nucleoplasm  nucleoplasm  nucleolus  nucleolus  endoplasmic reticulum  Golgi apparatus  response to DNA damage stimulus  sister chromatid cohesion  Notch signaling pathway  negative regulation of triglyceride biosynthetic process  regulation of lipid storage  protein ubiquitination  SCF ubiquitin ligase complex  virus-host interaction  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  negative regulation of DNA endoreduplication  regulation of protein localization  cellular response to UV  protein complex  positive regulation of epidermal growth factor-activated receptor activity  negative regulation of Notch signaling pathway  protein stabilization  lipid homeostasis  positive regulation of ERK1 and ERK2 cascade  positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  negative regulation of hepatocyte proliferation  negative regulation of SREBP signaling pathway  
Pathways : BIOCARTACyclin E Destruction Pathway [Genes]   
Pathways : KEGGUbiquitin mediated proteolysisNeurodegenerative Disorders
Other databases
Probes
Litterature
PubMed149 Pubmed reference(s) in Entrez
PubGeneFBXW7
iHOPFBXW7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:43:01 CEST 2013
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