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FBXW9 (F-box and WD repeat domain containing 9)

Identity

Alias_namesF-box and WD-40 domain protein 9
Alias_symbol (synonym)MGC10870
Fbw9
Other alias
HGNC (Hugo) FBXW9
LocusID (NCBI) 84261
Atlas_Id 63344
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12688916 and ends at 12696641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Target Validation
Nomenclature
HGNC (Hugo)FBXW9   28136
Cards
Entrez_Gene (NCBI)FBXW9  84261  F-box and WD repeat domain containing 9
AliasesFbw9
GeneCards (Weizmann)FBXW9
Ensembl hg19 (Hinxton)ENSG00000132004 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132004 [Gene_View]  chr19:12688916-12696641 [Contig_View]  FBXW9 [Vega]
ICGC DataPortalENSG00000132004
TCGA cBioPortalFBXW9
AceView (NCBI)FBXW9
Genatlas (Paris)FBXW9
WikiGenes84261
SOURCE (Princeton)FBXW9
Genetics Home Reference (NIH)FBXW9
Genomic and cartography
GoldenPath hg38 (UCSC)FBXW9  -     chr19:12688916-12696641 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXW9  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblFBXW9 - 19p13.13 [CytoView hg19]  FBXW9 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBIFBXW9 [Mapview hg19]  FBXW9 [Mapview hg38]
OMIM609074   
Gene and transcription
Genbank (Entrez)AK123037 AK302744 AW083348 AY736034 BC004290
RefSeq transcript (Entrez)NM_032301
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXW9
Cluster EST : UnigeneHs.515154 [ NCBI ]
CGAP (NCI)Hs.515154
Alternative Splicing GalleryENSG00000132004
Gene ExpressionFBXW9 [ NCBI-GEO ]   FBXW9 [ EBI - ARRAY_EXPRESS ]   FBXW9 [ SEEK ]   FBXW9 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXW9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84261
GTEX Portal (Tissue expression)FBXW9
Human Protein AtlasENSG00000132004-FBXW9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XUX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XUX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XUX1
Splice isoforms : SwissVarQ5XUX1
PhosPhoSitePlusQ5XUX1
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)F-box_dom    G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)F-box-like (PF12937)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12937    pfam00400   
Domain families : Smart (EMBL)FBOX (SM00256)  WD40 (SM00320)  
Conserved Domain (NCBI)FBXW9
DMDM Disease mutations84261
Blocks (Seattle)FBXW9
SuperfamilyQ5XUX1
Human Protein Atlas [tissue]ENSG00000132004-FBXW9 [tissue]
Peptide AtlasQ5XUX1
HPRD12361
IPIIPI00787355   IPI00787226   IPI00477401   IPI01009273   
Protein Interaction databases
DIP (DOE-UCLA)Q5XUX1
IntAct (EBI)Q5XUX1
FunCoupENSG00000132004
BioGRIDFBXW9
STRING (EMBL)FBXW9
ZODIACFBXW9
Ontologies - Pathways
QuickGOQ5XUX1
Ontology : AmiGOprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  
Ontology : EGO-EBIprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  
NDEx NetworkFBXW9
Atlas of Cancer Signalling NetworkFBXW9
Wikipedia pathwaysFBXW9
Orthology - Evolution
OrthoDB84261
GeneTree (enSembl)ENSG00000132004
Phylogenetic Trees/Animal Genes : TreeFamFBXW9
HOVERGENQ5XUX1
HOGENOMQ5XUX1
Homologs : HomoloGeneFBXW9
Homology/Alignments : Family Browser (UCSC)FBXW9
Gene fusions - Rearrangements
Tumor Fusion PortalFBXW9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXW9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXW9
dbVarFBXW9
ClinVarFBXW9
1000_GenomesFBXW9 
Exome Variant ServerFBXW9
ExAC (Exome Aggregation Consortium)ENSG00000132004
GNOMAD BrowserENSG00000132004
Genetic variants : HAPMAP84261
Genomic Variants (DGV)FBXW9 [DGVbeta]
DECIPHERFBXW9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXW9 
Mutations
ICGC Data PortalFBXW9 
TCGA Data PortalFBXW9 
Broad Tumor PortalFBXW9
OASIS PortalFBXW9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXW9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXW9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXW9
DgiDB (Drug Gene Interaction Database)FBXW9
DoCM (Curated mutations)FBXW9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXW9 (select a term)
intoGenFBXW9
Cancer3DFBXW9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609074   
Orphanet
DisGeNETFBXW9
MedgenFBXW9
Genetic Testing Registry FBXW9
NextProtQ5XUX1 [Medical]
TSGene84261
GENETestsFBXW9
FBXW9
Huge Navigator FBXW9 [HugePedia]
snp3D : Map Gene to Disease84261
BioCentury BCIQFBXW9
ClinGenFBXW9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84261
Chemical/Pharm GKB GenePA134910095
Clinical trialFBXW9
Miscellaneous
canSAR (ICR)FBXW9 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXW9
EVEXFBXW9
GoPubMedFBXW9
iHOPFBXW9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:29:40 CET 2017

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