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FCF1 (FCF1 rRNA-processing protein)

Identity

Alias_namesC14orf111
chromosome 14 open reading frame 111
FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
Alias_symbol (synonym)CGI-35
Bka
UTP24
Other alias
HGNC (Hugo) FCF1
LocusID (NCBI) 51077
Atlas_Id 63346
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74713170 and ends at 74736687 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAPK1IP1L (14q22.3) / FCF1 (14q24.3)MCM7 (7q22.1) / FCF1 (14q24.3)TIMM9 (14q23.1) / FCF1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCF1   20220
Cards
Entrez_Gene (NCBI)FCF1  51077  FCF1 rRNA-processing protein
AliasesBka; C14orf111; CGI-35; UTP24
GeneCards (Weizmann)FCF1
Ensembl hg19 (Hinxton)ENSG00000119616 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119616 [Gene_View]  chr14:74713170-74736687 [Contig_View]  FCF1 [Vega]
ICGC DataPortalENSG00000119616
TCGA cBioPortalFCF1
AceView (NCBI)FCF1
Genatlas (Paris)FCF1
WikiGenes51077
SOURCE (Princeton)FCF1
Genetics Home Reference (NIH)FCF1
Genomic and cartography
GoldenPath hg38 (UCSC)FCF1  -     chr14:74713170-74736687 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCF1  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblFCF1 - 14q24.3 [CytoView hg19]  FCF1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIFCF1 [Mapview hg19]  FCF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF132969 AK021636 AK057060 AK290666 BC022361
RefSeq transcript (Entrez)NM_001318508 NM_015962
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FCF1
Cluster EST : UnigeneHs.711584 [ NCBI ]
CGAP (NCI)Hs.711584
Alternative Splicing GalleryENSG00000119616
Gene ExpressionFCF1 [ NCBI-GEO ]   FCF1 [ EBI - ARRAY_EXPRESS ]   FCF1 [ SEEK ]   FCF1 [ MEM ]
Gene Expression Viewer (FireBrowse)FCF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51077
GTEX Portal (Tissue expression)FCF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y324   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y324  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y324
Splice isoforms : SwissVarQ9Y324
PhosPhoSitePlusQ9Y324
Domains : Interpro (EBI)Fcf1/Utp23    PIN_dom    PIN_domain-like   
Domain families : Pfam (Sanger)Fcf1 (PF04900)   
Domain families : Pfam (NCBI)pfam04900   
Domain families : Smart (EMBL)PINc (SM00670)  
Conserved Domain (NCBI)FCF1
DMDM Disease mutations51077
Blocks (Seattle)FCF1
SuperfamilyQ9Y324
Human Protein AtlasENSG00000119616
Peptide AtlasQ9Y324
HPRD12633
IPIIPI00427242   IPI00982125   IPI01026088   IPI01025745   IPI01025824   IPI01025468   IPI01025605   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y324
IntAct (EBI)Q9Y324
FunCoupENSG00000119616
BioGRIDFCF1
STRING (EMBL)FCF1
ZODIACFCF1
Ontologies - Pathways
QuickGOQ9Y324
Ontology : AmiGOendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleoplasm  nucleolus  rRNA processing  small-subunit processome  
Ontology : EGO-EBIendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleoplasm  nucleolus  rRNA processing  small-subunit processome  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkFCF1
Atlas of Cancer Signalling NetworkFCF1
Wikipedia pathwaysFCF1
Orthology - Evolution
OrthoDB51077
GeneTree (enSembl)ENSG00000119616
Phylogenetic Trees/Animal Genes : TreeFamFCF1
HOVERGENQ9Y324
HOGENOMQ9Y324
Homologs : HomoloGeneFCF1
Homology/Alignments : Family Browser (UCSC)FCF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCF1
dbVarFCF1
ClinVarFCF1
1000_GenomesFCF1 
Exome Variant ServerFCF1
ExAC (Exome Aggregation Consortium)FCF1 (select the gene name)
Genetic variants : HAPMAP51077
Genomic Variants (DGV)FCF1 [DGVbeta]
DECIPHERFCF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCF1 
Mutations
ICGC Data PortalFCF1 
TCGA Data PortalFCF1 
Broad Tumor PortalFCF1
OASIS PortalFCF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFCF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCF1
DgiDB (Drug Gene Interaction Database)FCF1
DoCM (Curated mutations)FCF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCF1 (select a term)
intoGenFCF1
Cancer3DFCF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFCF1
Genetic Testing Registry FCF1
NextProtQ9Y324 [Medical]
TSGene51077
GENETestsFCF1
Target ValidationFCF1
Huge Navigator FCF1 [HugePedia]
snp3D : Map Gene to Disease51077
BioCentury BCIQFCF1
ClinGenFCF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51077
Chemical/Pharm GKB GenePA162388159
Clinical trialFCF1
Miscellaneous
canSAR (ICR)FCF1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCF1
EVEXFCF1
GoPubMedFCF1
iHOPFCF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:24 CEST 2017

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