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FCGBP (Fc fragment of IgG binding protein)

Identity

Alias_symbol (synonym)FC(GAMMA)BP
Other alias
HGNC (Hugo) FCGBP
LocusID (NCBI) 8857
Atlas_Id 51944
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39863323 and ends at 39934626 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FCGBP (19q13.2) / FCGBP (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCGBP   13572
Cards
Entrez_Gene (NCBI)FCGBP  8857  Fc fragment of IgG binding protein
AliasesFC(GAMMA)BP
GeneCards (Weizmann)FCGBP
Ensembl hg19 (Hinxton)ENSG00000275395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275395 [Gene_View]  chr19:39863323-39934626 [Contig_View]  FCGBP [Vega]
ICGC DataPortalENSG00000275395
TCGA cBioPortalFCGBP
AceView (NCBI)FCGBP
Genatlas (Paris)FCGBP
WikiGenes8857
SOURCE (Princeton)FCGBP
Genetics Home Reference (NIH)FCGBP
Genomic and cartography
GoldenPath hg38 (UCSC)FCGBP  -     chr19:39863323-39934626 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCGBP  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblFCGBP - 19q13.2 [CytoView hg19]  FCGBP - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIFCGBP [Mapview hg19]  FCGBP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE294466 BM781647 BQ065661 BU731683 BX113070
RefSeq transcript (Entrez)NM_003890
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FCGBP
Cluster EST : UnigeneHs.111732 [ NCBI ]
CGAP (NCI)Hs.111732
Alternative Splicing GalleryENSG00000275395
Gene ExpressionFCGBP [ NCBI-GEO ]   FCGBP [ EBI - ARRAY_EXPRESS ]   FCGBP [ SEEK ]   FCGBP [ MEM ]
Gene Expression Viewer (FireBrowse)FCGBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8857
GTEX Portal (Tissue expression)FCGBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6R7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6R7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6R7
Splice isoforms : SwissVarQ9Y6R7
PhosPhoSitePlusQ9Y6R7
Domaine pattern : Prosite (Expaxy)VWFD (PS51233)   
Domains : Interpro (EBI)EGF-like_dom    Fol_N    TIL_dom    TILa_dom    Unchr_dom_Cys-rich    VWF_dom    VWF_type-D   
Domain families : Pfam (Sanger)C8 (PF08742)    TIL (PF01826)    TILa (PF12714)    VWD (PF00094)   
Domain families : Pfam (NCBI)pfam08742    pfam01826    pfam12714    pfam00094   
Domain families : Smart (EMBL)C8 (SM00832)  EGF (SM00181)  FOLN (SM00274)  VWC (SM00214)  VWC_out (SM00215)  VWD (SM00216)  
Conserved Domain (NCBI)FCGBP
DMDM Disease mutations8857
Blocks (Seattle)FCGBP
SuperfamilyQ9Y6R7
Human Protein AtlasENSG00000275395
Peptide AtlasQ9Y6R7
HPRD10956
IPIIPI00242956   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6R7
IntAct (EBI)Q9Y6R7
FunCoupENSG00000275395
BioGRIDFCGBP
STRING (EMBL)FCGBP
ZODIACFCGBP
Ontologies - Pathways
QuickGOQ9Y6R7
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
NDEx NetworkFCGBP
Atlas of Cancer Signalling NetworkFCGBP
Wikipedia pathwaysFCGBP
Orthology - Evolution
OrthoDB8857
GeneTree (enSembl)ENSG00000275395
Phylogenetic Trees/Animal Genes : TreeFamFCGBP
HOVERGENQ9Y6R7
HOGENOMQ9Y6R7
Homologs : HomoloGeneFCGBP
Homology/Alignments : Family Browser (UCSC)FCGBP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCGBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCGBP
dbVarFCGBP
ClinVarFCGBP
1000_GenomesFCGBP 
Exome Variant ServerFCGBP
ExAC (Exome Aggregation Consortium)FCGBP (select the gene name)
Genetic variants : HAPMAP8857
Genomic Variants (DGV)FCGBP [DGVbeta]
DECIPHERFCGBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCGBP 
Mutations
ICGC Data PortalFCGBP 
TCGA Data PortalFCGBP 
Broad Tumor PortalFCGBP
OASIS PortalFCGBP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFCGBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCGBP
DgiDB (Drug Gene Interaction Database)FCGBP
DoCM (Curated mutations)FCGBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCGBP (select a term)
intoGenFCGBP
Cancer3DFCGBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFCGBP
Genetic Testing Registry FCGBP
NextProtQ9Y6R7 [Medical]
TSGene8857
GENETestsFCGBP
Target ValidationFCGBP
Huge Navigator FCGBP [HugePedia]
snp3D : Map Gene to Disease8857
BioCentury BCIQFCGBP
ClinGenFCGBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8857
Chemical/Pharm GKB GenePA28059
Clinical trialFCGBP
Miscellaneous
canSAR (ICR)FCGBP (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCGBP
EVEXFCGBP
GoPubMedFCGBP
iHOPFCGBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:08:11 CEST 2017

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