Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FCGRT (Fc fragment of IgG receptor and transporter)

Identity

Alias_namesFc fragment of IgG
Alias_symbol (synonym)FCRN
alpha-chain
Other alias
HGNC (Hugo) FCGRT
LocusID (NCBI) 2217
Atlas_Id 55268
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49512279 and ends at 49526428 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FCGRT (19q13.33) / ALCAM (3q13.11)FCGRT (19q13.33) / RASSF4 (10q11.21)PRRG2 (19q13.33) / FCGRT (19q13.33)
PRRG2 19q13.33 / FCGRT 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCGRT   3621
Cards
Entrez_Gene (NCBI)FCGRT  2217  Fc fragment of IgG receptor and transporter
AliasesFCRN; alpha-chain
GeneCards (Weizmann)FCGRT
Ensembl hg19 (Hinxton)ENSG00000104870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104870 [Gene_View]  chr19:49512279-49526428 [Contig_View]  FCGRT [Vega]
ICGC DataPortalENSG00000104870
TCGA cBioPortalFCGRT
AceView (NCBI)FCGRT
Genatlas (Paris)FCGRT
WikiGenes2217
SOURCE (Princeton)FCGRT
Genetics Home Reference (NIH)FCGRT
Genomic and cartography
GoldenPath hg38 (UCSC)FCGRT  -     chr19:49512279-49526428 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCGRT  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblFCGRT - 19q13.33 [CytoView hg19]  FCGRT - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIFCGRT [Mapview hg19]  FCGRT [Mapview hg38]
OMIM601437   
Gene and transcription
Genbank (Entrez)AK074734 AK075510 AK075532 AK299124 BC008734
RefSeq transcript (Entrez)NM_001136019 NM_004107
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FCGRT
Cluster EST : UnigeneHs.111903 [ NCBI ]
CGAP (NCI)Hs.111903
Alternative Splicing GalleryENSG00000104870
Gene ExpressionFCGRT [ NCBI-GEO ]   FCGRT [ EBI - ARRAY_EXPRESS ]   FCGRT [ SEEK ]   FCGRT [ MEM ]
Gene Expression Viewer (FireBrowse)FCGRT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2217
GTEX Portal (Tissue expression)FCGRT
Human Protein AtlasENSG00000104870-FCGRT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55899   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55899  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55899
Splice isoforms : SwissVarP55899
PhosPhoSitePlusP55899
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)C1-set (PF07654)    MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam07654    pfam00129   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)FCGRT
DMDM Disease mutations2217
Blocks (Seattle)FCGRT
PDB (SRS)1EXU    3M17    3M1B    4K71    4N0F    4N0U    5BXF   
PDB (PDBSum)1EXU    3M17    3M1B    4K71    4N0F    4N0U    5BXF   
PDB (IMB)1EXU    3M17    3M1B    4K71    4N0F    4N0U    5BXF   
PDB (RSDB)1EXU    3M17    3M1B    4K71    4N0F    4N0U    5BXF   
Structural Biology KnowledgeBase1EXU    3M17    3M1B    4K71    4N0F    4N0U    5BXF   
SCOP (Structural Classification of Proteins)1EXU    3M17    3M1B    4K71    4N0F    4N0U    5BXF   
CATH (Classification of proteins structures)1EXU    3M17    3M1B    4K71    4N0F    4N0U    5BXF   
SuperfamilyP55899
Human Protein Atlas [tissue]ENSG00000104870-FCGRT [tissue]
Peptide AtlasP55899
HPRD03257
IPIIPI00026646   IPI00942805   IPI00943111   
Protein Interaction databases
DIP (DOE-UCLA)P55899
IntAct (EBI)P55899
FunCoupENSG00000104870
BioGRIDFCGRT
STRING (EMBL)FCGRT
ZODIACFCGRT
Ontologies - Pathways
QuickGOP55899
Ontology : AmiGOIgG immunoglobulin transcytosis in epithelial cells mediated by FcRn immunoglobulin receptor  antigen binding  plasma membrane  integral component of membrane  IgG receptor activity  IgG binding  antigen processing and presentation  beta-2-microglobulin binding  Fc-gamma receptor signaling pathway  peptide antigen binding  
Ontology : EGO-EBIIgG immunoglobulin transcytosis in epithelial cells mediated by FcRn immunoglobulin receptor  antigen binding  plasma membrane  integral component of membrane  IgG receptor activity  IgG binding  antigen processing and presentation  beta-2-microglobulin binding  Fc-gamma receptor signaling pathway  peptide antigen binding  
NDEx NetworkFCGRT
Atlas of Cancer Signalling NetworkFCGRT
Wikipedia pathwaysFCGRT
Orthology - Evolution
OrthoDB2217
GeneTree (enSembl)ENSG00000104870
Phylogenetic Trees/Animal Genes : TreeFamFCGRT
HOVERGENP55899
HOGENOMP55899
Homologs : HomoloGeneFCGRT
Homology/Alignments : Family Browser (UCSC)FCGRT
Gene fusions - Rearrangements
Fusion : MitelmanPRRG2/FCGRT [19q13.33/19q13.33]  [t(19;19)(q13;q13)]  
Fusion: TCGA_MDACCPRRG2 19q13.33 FCGRT 19q13.33 BRCA
Tumor Fusion PortalFCGRT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCGRT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCGRT
dbVarFCGRT
ClinVarFCGRT
1000_GenomesFCGRT 
Exome Variant ServerFCGRT
ExAC (Exome Aggregation Consortium)ENSG00000104870
GNOMAD BrowserENSG00000104870
Genetic variants : HAPMAP2217
Genomic Variants (DGV)FCGRT [DGVbeta]
DECIPHERFCGRT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCGRT 
Mutations
ICGC Data PortalFCGRT 
TCGA Data PortalFCGRT 
Broad Tumor PortalFCGRT
OASIS PortalFCGRT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCGRT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFCGRT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCGRT
DgiDB (Drug Gene Interaction Database)FCGRT
DoCM (Curated mutations)FCGRT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCGRT (select a term)
intoGenFCGRT
Cancer3DFCGRT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601437   
Orphanet
DisGeNETFCGRT
MedgenFCGRT
Genetic Testing Registry FCGRT
NextProtP55899 [Medical]
TSGene2217
GENETestsFCGRT
Target ValidationFCGRT
Huge Navigator FCGRT [HugePedia]
snp3D : Map Gene to Disease2217
BioCentury BCIQFCGRT
ClinGenFCGRT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2217
Chemical/Pharm GKB GenePA28067
Clinical trialFCGRT
Miscellaneous
canSAR (ICR)FCGRT (select the gene name)
Probes
Litterature
PubMed97 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCGRT
EVEXFCGRT
GoPubMedFCGRT
iHOPFCGRT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:13:07 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.