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FCHO1 (FCH domain only 1)

Identity

Alias_symbol (synonym)KIAA0290
Other alias-
HGNC (Hugo) FCHO1
LocusID (NCBI) 23149
Atlas_Id 54316
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17858527 and ends at 17899377 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IL4R (16p12.1) / FCHO1 (19p13.11)MYO9B (19p13.11) / FCHO1 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCHO1   29002
Cards
Entrez_Gene (NCBI)FCHO1  23149  FCH domain only 1
Aliases
GeneCards (Weizmann)FCHO1
Ensembl hg19 (Hinxton)ENSG00000130475 [Gene_View]  chr19:17858527-17899377 [Contig_View]  FCHO1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130475 [Gene_View]  chr19:17858527-17899377 [Contig_View]  FCHO1 [Vega]
ICGC DataPortalENSG00000130475
TCGA cBioPortalFCHO1
AceView (NCBI)FCHO1
Genatlas (Paris)FCHO1
WikiGenes23149
SOURCE (Princeton)FCHO1
Genetics Home Reference (NIH)FCHO1
Genomic and cartography
GoldenPath hg19 (UCSC)FCHO1  -     chr19:17858527-17899377 +  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FCHO1  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblFCHO1 - 19p13.11 [CytoView hg19]  FCHO1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIFCHO1 [Mapview hg19]  FCHO1 [Mapview hg38]
OMIM613437   
Gene and transcription
Genbank (Entrez)AB006628 AK291410 AK303623 AK309403 AK316458
RefSeq transcript (Entrez)NM_001161357 NM_001161358 NM_001161359 NM_015122
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)FCHO1
Cluster EST : UnigeneHs.96485 [ NCBI ]
CGAP (NCI)Hs.96485
Alternative Splicing GalleryENSG00000130475
Gene ExpressionFCHO1 [ NCBI-GEO ]   FCHO1 [ EBI - ARRAY_EXPRESS ]   FCHO1 [ SEEK ]   FCHO1 [ MEM ]
Gene Expression Viewer (FireBrowse)FCHO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23149
GTEX Portal (Tissue expression)FCHO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14526   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14526  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14526
Splice isoforms : SwissVarO14526
PhosPhoSitePlusO14526
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    MHD (PS51072)   
Domains : Interpro (EBI)F_BAR    FCH_dom    FCHo1    MHD    Muniscin_C   
Domain families : Pfam (Sanger)FCH (PF00611)    muHD (PF10291)   
Domain families : Pfam (NCBI)pfam00611    pfam10291   
Domain families : Smart (EMBL)FCH (SM00055)  
Conserved Domain (NCBI)FCHO1
DMDM Disease mutations23149
Blocks (Seattle)FCHO1
SuperfamilyO14526
Human Protein AtlasENSG00000130475
Peptide AtlasO14526
HPRD16887
IPIIPI00182164   IPI00642769   IPI00930746   
Protein Interaction databases
DIP (DOE-UCLA)O14526
IntAct (EBI)O14526
FunCoupENSG00000130475
BioGRIDFCHO1
STRING (EMBL)FCHO1
ZODIACFCHO1
Ontologies - Pathways
QuickGOO14526
Ontology : AmiGOprotein binding  plasma membrane  coated pit  clathrin-coated vesicle  AP-2 adaptor complex binding  clathrin coat assembly  clathrin-mediated endocytosis  
Ontology : EGO-EBIprotein binding  plasma membrane  coated pit  clathrin-coated vesicle  AP-2 adaptor complex binding  clathrin coat assembly  clathrin-mediated endocytosis  
NDEx NetworkFCHO1
Atlas of Cancer Signalling NetworkFCHO1
Wikipedia pathwaysFCHO1
Orthology - Evolution
OrthoDB23149
GeneTree (enSembl)ENSG00000130475
Phylogenetic Trees/Animal Genes : TreeFamFCHO1
HOVERGENO14526
HOGENOMO14526
Homologs : HomoloGeneFCHO1
Homology/Alignments : Family Browser (UCSC)FCHO1
Gene fusions - Rearrangements
Fusion : MitelmanMYO9B/FCHO1 [19p13.11/19p13.11]  [del(19)(p13p13)]  [t(19;19)(p13;p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCHO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCHO1
dbVarFCHO1
ClinVarFCHO1
1000_GenomesFCHO1 
Exome Variant ServerFCHO1
ExAC (Exome Aggregation Consortium)FCHO1 (select the gene name)
Genetic variants : HAPMAP23149
Genomic Variants (DGV)FCHO1 [DGVbeta]
DECIPHER (Syndromes)19:17858527-17899377  ENSG00000130475
CONAN: Copy Number AnalysisFCHO1 
Mutations
ICGC Data PortalFCHO1 
TCGA Data PortalFCHO1 
Broad Tumor PortalFCHO1
OASIS PortalFCHO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCHO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFCHO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCHO1
DgiDB (Drug Gene Interaction Database)FCHO1
DoCM (Curated mutations)FCHO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCHO1 (select a term)
intoGenFCHO1
Cancer3DFCHO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613437   
Orphanet
MedgenFCHO1
Genetic Testing Registry FCHO1
NextProtO14526 [Medical]
TSGene23149
GENETestsFCHO1
Huge Navigator FCHO1 [HugePedia]
snp3D : Map Gene to Disease23149
BioCentury BCIQFCHO1
ClinGenFCHO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23149
Chemical/Pharm GKB GenePA134870625
Clinical trialFCHO1
Miscellaneous
canSAR (ICR)FCHO1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCHO1
EVEXFCHO1
GoPubMedFCHO1
iHOPFCHO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:01:05 CEST 2017

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