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FCHSD1 (FCH and double SH3 domains 1)

Identity

Alias_symbol (synonym)FLJ00007
Other aliasNWK2
HGNC (Hugo) FCHSD1
LocusID (NCBI) 89848
Atlas_Id 43257
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141639302 and ends at 141651419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FCHSD1 (5q31.3) / BRAF (7q34)FCHSD1 5q31.3 / BRAF 7q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCHSD1   25463
Cards
Entrez_Gene (NCBI)FCHSD1  89848  FCH and double SH3 domains 1
AliasesNWK2
GeneCards (Weizmann)FCHSD1
Ensembl hg19 (Hinxton)ENSG00000197948 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197948 [Gene_View]  chr5:141639302-141651419 [Contig_View]  FCHSD1 [Vega]
ICGC DataPortalENSG00000197948
TCGA cBioPortalFCHSD1
AceView (NCBI)FCHSD1
Genatlas (Paris)FCHSD1
WikiGenes89848
SOURCE (Princeton)FCHSD1
Genetics Home Reference (NIH)FCHSD1
Genomic and cartography
GoldenPath hg38 (UCSC)FCHSD1  -     chr5:141639302-141651419 -  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCHSD1  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblFCHSD1 - 5q31.3 [CytoView hg19]  FCHSD1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIFCHSD1 [Mapview hg19]  FCHSD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086518 AK000007 AK027281 AK126203 AY217346
RefSeq transcript (Entrez)NM_033449
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FCHSD1
Cluster EST : UnigeneHs.591257 [ NCBI ]
CGAP (NCI)Hs.591257
Alternative Splicing GalleryENSG00000197948
Gene ExpressionFCHSD1 [ NCBI-GEO ]   FCHSD1 [ EBI - ARRAY_EXPRESS ]   FCHSD1 [ SEEK ]   FCHSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FCHSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89848
GTEX Portal (Tissue expression)FCHSD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WN1
Splice isoforms : SwissVarQ86WN1
PhosPhoSitePlusQ86WN1
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    SH3 (PS50002)   
Domains : Interpro (EBI)F_BAR    FCH_dom    SH3_domain   
Domain families : Pfam (Sanger)FCH (PF00611)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00611    pfam14604   
Domain families : Smart (EMBL)FCH (SM00055)  SH3 (SM00326)  
Conserved Domain (NCBI)FCHSD1
DMDM Disease mutations89848
Blocks (Seattle)FCHSD1
SuperfamilyQ86WN1
Human Protein AtlasENSG00000197948
Peptide AtlasQ86WN1
HPRD13320
IPIIPI00827912   IPI00828077   IPI00020758   IPI00974317   IPI00985023   IPI00974206   
Protein Interaction databases
DIP (DOE-UCLA)Q86WN1
IntAct (EBI)Q86WN1
FunCoupENSG00000197948
BioGRIDFCHSD1
STRING (EMBL)FCHSD1
ZODIACFCHSD1
Ontologies - Pathways
QuickGOQ86WN1
Ontology : AmiGOneuromuscular synaptic transmission  regulation of actin filament polymerization  neuromuscular junction  recycling endosome  
Ontology : EGO-EBIneuromuscular synaptic transmission  regulation of actin filament polymerization  neuromuscular junction  recycling endosome  
NDEx NetworkFCHSD1
Atlas of Cancer Signalling NetworkFCHSD1
Wikipedia pathwaysFCHSD1
Orthology - Evolution
OrthoDB89848
GeneTree (enSembl)ENSG00000197948
Phylogenetic Trees/Animal Genes : TreeFamFCHSD1
HOVERGENQ86WN1
HOGENOMQ86WN1
Homologs : HomoloGeneFCHSD1
Homology/Alignments : Family Browser (UCSC)FCHSD1
Gene fusions - Rearrangements
Fusion : MitelmanFCHSD1/BRAF [5q31.3/7q34]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCHSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCHSD1
dbVarFCHSD1
ClinVarFCHSD1
1000_GenomesFCHSD1 
Exome Variant ServerFCHSD1
ExAC (Exome Aggregation Consortium)FCHSD1 (select the gene name)
Genetic variants : HAPMAP89848
Genomic Variants (DGV)FCHSD1 [DGVbeta]
DECIPHERFCHSD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCHSD1 
Mutations
ICGC Data PortalFCHSD1 
TCGA Data PortalFCHSD1 
Broad Tumor PortalFCHSD1
OASIS PortalFCHSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCHSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFCHSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCHSD1
DgiDB (Drug Gene Interaction Database)FCHSD1
DoCM (Curated mutations)FCHSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCHSD1 (select a term)
intoGenFCHSD1
Cancer3DFCHSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFCHSD1
Genetic Testing Registry FCHSD1
NextProtQ86WN1 [Medical]
TSGene89848
GENETestsFCHSD1
Target ValidationFCHSD1
Huge Navigator FCHSD1 [HugePedia]
snp3D : Map Gene to Disease89848
BioCentury BCIQFCHSD1
ClinGenFCHSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89848
Chemical/Pharm GKB GenePA134871859
Clinical trialFCHSD1
Miscellaneous
canSAR (ICR)FCHSD1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCHSD1
EVEXFCHSD1
GoPubMedFCHSD1
iHOPFCHSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:08:13 CEST 2017

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