Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA
Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

Donate (in US Dollars)

FCHSD2 (FCH and double SH3 domains 2)

Identity

Other namesNWK
SH3MD3
HGNC (Hugo) FCHSD2
LocusID (NCBI) 9873
Location 11q13.4
Location_base_pair Starts at 72547790 and ends at 72853143 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FCHSD2   29114
Cards
Entrez_Gene (NCBI)FCHSD2  9873  FCH and double SH3 domains 2
GeneCards (Weizmann)FCHSD2
Ensembl hg19 (Hinxton)ENSG00000137478 [Gene_View]  chr11:72547790-72853143 [Contig_View]  FCHSD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137478 [Gene_View]  chr11:72547790-72853143 [Contig_View]  FCHSD2 [Vega]
ICGC DataPortalENSG00000137478
cBioPortalFCHSD2
AceView (NCBI)FCHSD2
Genatlas (Paris)FCHSD2
WikiGenes9873
SOURCE (Princeton)FCHSD2
Genomic and cartography
GoldenPath hg19 (UCSC)FCHSD2  -     chr11:72547790-72853143 -  11q13.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FCHSD2  -     11q13.4   [Description]    (hg38-Dec_2013)
EnsemblFCHSD2 - 11q13.4 [CytoView hg19]  FCHSD2 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIFCHSD2 [Mapview hg19]  FCHSD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018312 AK128381 AK296376 AK297928 AL080236
RefSeq transcript (Entrez)NM_014824
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838028 NW_004929380
Consensus coding sequences : CCDS (NCBI)FCHSD2
Cluster EST : UnigeneHs.744959 [ NCBI ]
CGAP (NCI)Hs.744959
Alternative Splicing : Fast-db (Paris)GSHG0006000
Alternative Splicing GalleryENSG00000137478
Gene ExpressionFCHSD2 [ NCBI-GEO ]     FCHSD2 [ SEEK ]   FCHSD2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94868 (Uniprot)
NextProtO94868  [Medical]
With graphics : InterProO94868
Splice isoforms : SwissVarO94868 (Swissvar)
Domaine pattern : Prosite (Expaxy)FCH (PS50133)    SH3 (PS50002)   
Domains : Interpro (EBI)FCH_dom    SH3_domain   
Related proteins : CluSTrO94868
Domain families : Pfam (Sanger)FCH (PF00611)    SH3_1 (PF00018)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00611    pfam00018    pfam14604   
Domain families : Smart (EMBL)SH3 (SM00326)  
DMDM Disease mutations9873
Blocks (Seattle)O94868
PDB (SRS)2DL5    2DL7   
PDB (PDBSum)2DL5    2DL7   
PDB (IMB)2DL5    2DL7   
PDB (RSDB)2DL5    2DL7   
Human Protein AtlasENSG00000137478
Peptide AtlasO94868
HPRD13321
IPIIPI00827702   IPI00410639   IPI00828164   IPI00910791   IPI00917388   IPI00917103   IPI01010956   IPI01011376   IPI01013549   
Protein Interaction databases
DIP (DOE-UCLA)O94868
IntAct (EBI)O94868
FunCoupENSG00000137478
BioGRIDFCHSD2
IntegromeDBFCHSD2
STRING (EMBL)FCHSD2
Ontologies - Pathways
QuickGOO94868
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
Protein Interaction DatabaseFCHSD2
DoCM (Curated mutations)FCHSD2
Wikipedia pathwaysFCHSD2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFCHSD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCHSD2
dbVarFCHSD2
ClinVarFCHSD2
1000_GenomesFCHSD2 
Exome Variant ServerFCHSD2
SNP (GeneSNP Utah)FCHSD2
SNP : HGBaseFCHSD2
Genetic variants : HAPMAPFCHSD2
Genomic Variants (DGV)FCHSD2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000137478 
Somatic Mutations in Cancer : COSMICFCHSD2 
CONAN: Copy Number AnalysisFCHSD2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:72547790-72853143
Mutations and Diseases : HGMDFCHSD2
OMIM
MedgenFCHSD2
NextProtO94868 [Medical]
GENETestsFCHSD2
Disease Genetic AssociationFCHSD2
Huge Navigator FCHSD2 [HugePedia]  FCHSD2 [HugeCancerGEM]
snp3D : Map Gene to Disease9873
DGIdb (Drug Gene Interaction db)FCHSD2
General knowledge
Homologs : HomoloGeneFCHSD2
Homology/Alignments : Family Browser (UCSC)FCHSD2
Phylogenetic Trees/Animal Genes : TreeFamFCHSD2
Chemical/Protein Interactions : CTD9873
Chemical/Pharm GKB GenePA128394562
Clinical trialFCHSD2
Cancer Resource (Charite)ENSG00000137478
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineFCHSD2
GoPubMedFCHSD2
iHOPFCHSD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:49:10 CET 2015
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.