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FCHSD2 (FCH and double SH3 domains 2)

Identity

Other namesNWK
SH3MD3
HGNC (Hugo) FCHSD2
LocusID (NCBI) 9873
Atlas_Id 43258
Location 11q13.4
Location_base_pair Starts at 72547790 and ends at 72853143 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP32 (11q24.3) / FCHSD2 (11q13.4)ATG16L2 (11q13.4) / FCHSD2 (11q13.4)EHBP1L1 (11q13.1) / FCHSD2 (11q13.4)
FCHSD2 (11q13.4) / ATP6V1H (8q11.23)FCHSD2 (11q13.4) / CARNS1 (11q13.2)FCHSD2 (11q13.4) / CPT1A (11q13.3)
FCHSD2 (11q13.4) / CYP27C1 (2q14.3)FCHSD2 (11q13.4) / DTX4 (11q12.1)FCHSD2 (11q13.4) / FAM168A (11q13.4)
FCHSD2 (11q13.4) / GLOD4 (17p13.3)FCHSD2 (11q13.4) / GUCY1A2 (11q22.3)FCHSD2 (11q13.4) / PLEKHB1 (11q13.4)
FCHSD2 (11q13.4) / RALYL (8q21.2)FCHSD2 (11q13.4) / RNF169 (11q13.4)FCHSD2 (11q13.4) / THRA (17q21.1)
FCHSD2 (11q13.4) / UQCC3 (11q12.3)SPRYD3 (12q13.13) / FCHSD2 (11q13.4)STARD10 (11q13.4) / FCHSD2 (11q13.4)
ARHGAP32 11q24.3 / FCHSD2 11q13.4FCHSD2 11q13.4 / ATP6V1H 8q11.23FCHSD2 11q13.4 C11orf83
FCHSD2 11q13.4 / CPT1A 11q13.3FCHSD2 11q13.4 / DTX4 11q12.1FCHSD2 11q13.4 / FAM168A 11q13.4
FCHSD2 11q13.4 / GLOD4 17p13.3FCHSD2 11q13.4 / GUCY1A2 11q22.3FCHSD2 11q13.4 / PLEKHB1 11q13.4
FCHSD2 11q13.4 / RALYL 8q21.2FCHSD2 11q13.4 / RNF169 11q13.4SPRYD3 12q13.13 / FCHSD2 11q13.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCHSD2   29114
Cards
Entrez_Gene (NCBI)FCHSD2  9873  FCH and double SH3 domains 2
GeneCards (Weizmann)FCHSD2
Ensembl hg19 (Hinxton)ENSG00000137478 [Gene_View]  chr11:72547790-72853143 [Contig_View]  FCHSD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137478 [Gene_View]  chr11:72547790-72853143 [Contig_View]  FCHSD2 [Vega]
ICGC DataPortalENSG00000137478
TCGA cBioPortalFCHSD2
AceView (NCBI)FCHSD2
Genatlas (Paris)FCHSD2
WikiGenes9873
SOURCE (Princeton)FCHSD2
Genomic and cartography
GoldenPath hg19 (UCSC)FCHSD2  -     chr11:72547790-72853143 -  11q13.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FCHSD2  -     11q13.4   [Description]    (hg38-Dec_2013)
EnsemblFCHSD2 - 11q13.4 [CytoView hg19]  FCHSD2 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIFCHSD2 [Mapview hg19]  FCHSD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018312 AK128381 AK296376 AK297928 AL080236
RefSeq transcript (Entrez)NM_014824
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)FCHSD2
Cluster EST : UnigeneHs.744959 [ NCBI ]
CGAP (NCI)Hs.744959
Alternative Splicing : Fast-db (Paris)GSHG0006000
Alternative Splicing GalleryENSG00000137478
Gene ExpressionFCHSD2 [ NCBI-GEO ]   FCHSD2 [ EBI - ARRAY_EXPRESS ]   FCHSD2 [ SEEK ]   FCHSD2 [ MEM ]
Gene Expression Viewer (FireBrowse)FCHSD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9873
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94868 (Uniprot)
NextProtO94868  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94868
Splice isoforms : SwissVarO94868 (Swissvar)
PhosPhoSitePlusO94868
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    SH3 (PS50002)   
Domains : Interpro (EBI)F_BAR    FCH_dom    SH3_domain   
Domain families : Pfam (Sanger)FCH (PF00611)    SH3_1 (PF00018)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00611    pfam00018    pfam14604   
Domain families : Smart (EMBL)SH3 (SM00326)  
DMDM Disease mutations9873
Blocks (Seattle)FCHSD2
PDB (SRS)2DL5    2DL7   
PDB (PDBSum)2DL5    2DL7   
PDB (IMB)2DL5    2DL7   
PDB (RSDB)2DL5    2DL7   
Structural Biology KnowledgeBase2DL5    2DL7   
SCOP (Structural Classification of Proteins)2DL5    2DL7   
CATH (Classification of proteins structures)2DL5    2DL7   
SuperfamilyO94868
Human Protein AtlasENSG00000137478
Peptide AtlasO94868
HPRD13321
IPIIPI00827702   IPI00410639   IPI00828164   IPI00910791   IPI00917388   IPI00917103   IPI01010956   IPI01011376   IPI01013549   
Protein Interaction databases
DIP (DOE-UCLA)O94868
IntAct (EBI)O94868
FunCoupENSG00000137478
BioGRIDFCHSD2
STRING (EMBL)FCHSD2
ZODIACFCHSD2
Ontologies - Pathways
QuickGOO94868
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx Network
Atlas of Cancer Signalling NetworkFCHSD2
Wikipedia pathwaysFCHSD2
Orthology - Evolution
OrthoDB9873
GeneTree (enSembl)ENSG00000137478
Phylogenetic Trees/Animal Genes : TreeFamFCHSD2
Homologs : HomoloGeneFCHSD2
Homology/Alignments : Family Browser (UCSC)FCHSD2
Gene fusions - Rearrangements
Fusion: TCGAARHGAP32 11q24.3 FCHSD2 11q13.4 BRCA
Fusion: TCGAFCHSD2 11q13.4 ATP6V1H 8q11.23 SKCM
Fusion: TCGAFCHSD2 11q13.4 C11orf83 BRCA
Fusion: TCGAFCHSD2 11q13.4 CPT1A 11q13.3 BRCA
Fusion: TCGAFCHSD2 11q13.4 DTX4 11q12.1 BRCA
Fusion: TCGAFCHSD2 11q13.4 FAM168A 11q13.4 BRCA
Fusion: TCGAFCHSD2 11q13.4 GLOD4 17p13.3 HNSC
Fusion: TCGAFCHSD2 11q13.4 GUCY1A2 11q22.3 HNSC
Fusion: TCGAFCHSD2 11q13.4 PLEKHB1 11q13.4 BRCA
Fusion: TCGAFCHSD2 11q13.4 RALYL 8q21.2 BRCA
Fusion: TCGAFCHSD2 11q13.4 RNF169 11q13.4 BRCA
Fusion: TCGASPRYD3 12q13.13 FCHSD2 11q13.4 LGG
Polymorphisms : SNP, variants
NCBI Variation ViewerFCHSD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCHSD2
dbVarFCHSD2
ClinVarFCHSD2
1000_GenomesFCHSD2 
Exome Variant ServerFCHSD2
ExAC (Exome Aggregation Consortium)FCHSD2 (select the gene name)
SNP (GeneSNP Utah)FCHSD2
SNP : HGBaseFCHSD2
Genetic variants : HAPMAPFCHSD2
Genomic Variants (DGV)FCHSD2 [DGVbeta]
Mutations
ICGC Data PortalFCHSD2 
TCGA Data PortalFCHSD2 
Broad Tumor PortalFCHSD2
OASIS PortalFCHSD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCHSD2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCHSD2
DgiDB (Drug Gene Interaction Database)FCHSD2
DoCM (Curated mutations)FCHSD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCHSD2 (select a term)
intoGenFCHSD2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:72547790-72853143
CONAN: Copy Number AnalysisFCHSD2 
Mutations and Diseases : HGMDFCHSD2
OMIM
MedgenFCHSD2
Genetic Testing Registry FCHSD2
NextProtO94868 [Medical]
TSGene9873
GENETestsFCHSD2
Huge Navigator FCHSD2 [HugePedia]  FCHSD2 [HugeCancerGEM]
snp3D : Map Gene to Disease9873
BioCentury BCIQFCHSD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9873
Chemical/Pharm GKB GenePA128394562
Clinical trialFCHSD2
Miscellaneous
canSAR (ICR)FCHSD2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCHSD2
GoPubMedFCHSD2
iHOPFCHSD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 16 17:44:46 CEST 2016

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