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FCMR (Fc fragment of IgM receptor)

Identity

Alias_namesFAIM3
Fas apoptotic inhibitory molecule 3
Alias_symbol (synonym)TOSO
Other alias
HGNC (Hugo) FCMR
LocusID (NCBI) 9214
Atlas_Id 42664
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 206903286 and ends at 206922033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FCMR (1q32.1) / FCMR (1q32.1)FCMR (1q32.1) / PSMF1 (20p13)FCMR (1q32.1) / SEPT9 (17q25.2)
FCMR (1q32.1) / TMEM87A (15q15.1)MYO1D (17q11.2) / FCMR (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCMR   14315
Cards
Entrez_Gene (NCBI)FCMR  9214  Fc fragment of IgM receptor
AliasesFAIM3; TOSO
GeneCards (Weizmann)FCMR
Ensembl hg19 (Hinxton)ENSG00000162894 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162894 [Gene_View]  chr1:206903286-206922033 [Contig_View]  FCMR [Vega]
ICGC DataPortalENSG00000162894
TCGA cBioPortalFCMR
AceView (NCBI)FCMR
Genatlas (Paris)FCMR
WikiGenes9214
SOURCE (Princeton)FCMR
Genetics Home Reference (NIH)FCMR
Genomic and cartography
GoldenPath hg38 (UCSC)FCMR  -     chr1:206903286-206922033 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCMR  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblFCMR - 1q32.1 [CytoView hg19]  FCMR - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIFCMR [Mapview hg19]  FCMR [Mapview hg38]
OMIM606015   
Gene and transcription
Genbank (Entrez)AA769146 AF057557 AI524407 AK292007 AK297053
RefSeq transcript (Entrez)NM_001142472 NM_001142473 NM_001193338 NM_005449
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FCMR
Cluster EST : UnigeneHs.744273 [ NCBI ]
CGAP (NCI)Hs.744273
Alternative Splicing GalleryENSG00000162894
Gene ExpressionFCMR [ NCBI-GEO ]   FCMR [ EBI - ARRAY_EXPRESS ]   FCMR [ SEEK ]   FCMR [ MEM ]
Gene Expression Viewer (FireBrowse)FCMR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9214
GTEX Portal (Tissue expression)FCMR
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60667   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60667  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60667
Splice isoforms : SwissVarO60667
PhosPhoSitePlusO60667
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)FCMR
DMDM Disease mutations9214
Blocks (Seattle)FCMR
SuperfamilyO60667
Human Protein AtlasENSG00000162894
Peptide AtlasO60667
HPRD09349
IPIIPI00023119   IPI00922802   IPI00970873   IPI00978002   IPI00982458   IPI00978881   
Protein Interaction databases
DIP (DOE-UCLA)O60667
IntAct (EBI)O60667
FunCoupENSG00000162894
BioGRIDFCMR
STRING (EMBL)FCMR
ZODIACFCMR
Ontologies - Pathways
QuickGOO60667
Ontology : AmiGOimmune system process  extracellular region  cellular defense response  integral component of membrane  negative regulation of apoptotic process  
Ontology : EGO-EBIimmune system process  extracellular region  cellular defense response  integral component of membrane  negative regulation of apoptotic process  
NDEx NetworkFCMR
Atlas of Cancer Signalling NetworkFCMR
Wikipedia pathwaysFCMR
Orthology - Evolution
OrthoDB9214
GeneTree (enSembl)ENSG00000162894
Phylogenetic Trees/Animal Genes : TreeFamFCMR
HOVERGENO60667
HOGENOMO60667
Homologs : HomoloGeneFCMR
Homology/Alignments : Family Browser (UCSC)FCMR
Gene fusions - Rearrangements
Fusion : MitelmanMYO1D/FCMR [17q11.2/1q32.1]  [t(1;17)(q32;q11)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCMR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCMR
dbVarFCMR
ClinVarFCMR
1000_GenomesFCMR 
Exome Variant ServerFCMR
ExAC (Exome Aggregation Consortium)FCMR (select the gene name)
Genetic variants : HAPMAP9214
Genomic Variants (DGV)FCMR [DGVbeta]
DECIPHERFCMR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCMR 
Mutations
ICGC Data PortalFCMR 
TCGA Data PortalFCMR 
Broad Tumor PortalFCMR
OASIS PortalFCMR [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFCMR
BioMutasearch FCMR
DgiDB (Drug Gene Interaction Database)FCMR
DoCM (Curated mutations)FCMR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCMR (select a term)
intoGenFCMR
Cancer3DFCMR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606015   
Orphanet
MedgenFCMR
Genetic Testing Registry FCMR
NextProtO60667 [Medical]
TSGene9214
GENETestsFCMR
Target ValidationFCMR
Huge Navigator FCMR [HugePedia]
snp3D : Map Gene to Disease9214
BioCentury BCIQFCMR
ClinGenFCMR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9214
Chemical/Pharm GKB GenePA142671899
Clinical trialFCMR
Miscellaneous
canSAR (ICR)FCMR (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCMR
EVEXFCMR
GoPubMedFCMR
iHOPFCMR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:44 CEST 2017

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