Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FCRL1 (Fc receptor like 1)

Identity

Alias_namesFc receptor-like 1
Alias_symbol (synonym)FCRH1
IRTA5
IFGP1
CD307a
Other alias
HGNC (Hugo) FCRL1
LocusID (NCBI) 115350
Atlas_Id 50438
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 157794404 and ends at 157820150 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FCRL1 (1q23.1) / ILF2 (1q21.3)FCRL1 (1q23.1) / KATNA1 (6q25.1)FCRL1 (1q23.1) / RASAL2 (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FCRL1   18509
Cards
Entrez_Gene (NCBI)FCRL1  115350  Fc receptor like 1
AliasesCD307a; FCRH1; IFGP1; IRTA5
GeneCards (Weizmann)FCRL1
Ensembl hg19 (Hinxton)ENSG00000163534 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163534 [Gene_View]  chr1:157794404-157820150 [Contig_View]  FCRL1 [Vega]
ICGC DataPortalENSG00000163534
TCGA cBioPortalFCRL1
AceView (NCBI)FCRL1
Genatlas (Paris)FCRL1
WikiGenes115350
SOURCE (Princeton)FCRL1
Genetics Home Reference (NIH)FCRL1
Genomic and cartography
GoldenPath hg38 (UCSC)FCRL1  -     chr1:157794404-157820150 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCRL1  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblFCRL1 - 1q23.1 [CytoView hg19]  FCRL1 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIFCRL1 [Mapview hg19]  FCRL1 [Mapview hg38]
OMIM606508   
Gene and transcription
Genbank (Entrez)AF329488 AF459634 AK096690 AK315748 AL833674
RefSeq transcript (Entrez)NM_001159397 NM_001159398 NM_052938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FCRL1
Cluster EST : UnigeneHs.656112 [ NCBI ]
CGAP (NCI)Hs.656112
Alternative Splicing GalleryENSG00000163534
Gene ExpressionFCRL1 [ NCBI-GEO ]   FCRL1 [ EBI - ARRAY_EXPRESS ]   FCRL1 [ SEEK ]   FCRL1 [ MEM ]
Gene Expression Viewer (FireBrowse)FCRL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115350
GTEX Portal (Tissue expression)FCRL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LA6
Splice isoforms : SwissVarQ96LA6
PhosPhoSitePlusQ96LA6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)FCRL1
DMDM Disease mutations115350
Blocks (Seattle)FCRL1
SuperfamilyQ96LA6
Human Protein AtlasENSG00000163534
Peptide AtlasQ96LA6
HPRD07350
IPIIPI00064951   IPI00644153   IPI00167103   IPI00386065   
Protein Interaction databases
DIP (DOE-UCLA)Q96LA6
IntAct (EBI)Q96LA6
FunCoupENSG00000163534
BioGRIDFCRL1
STRING (EMBL)FCRL1
ZODIACFCRL1
Ontologies - Pathways
QuickGOQ96LA6
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkFCRL1
Atlas of Cancer Signalling NetworkFCRL1
Wikipedia pathwaysFCRL1
Orthology - Evolution
OrthoDB115350
GeneTree (enSembl)ENSG00000163534
Phylogenetic Trees/Animal Genes : TreeFamFCRL1
HOVERGENQ96LA6
HOGENOMQ96LA6
Homologs : HomoloGeneFCRL1
Homology/Alignments : Family Browser (UCSC)FCRL1
Gene fusions - Rearrangements
Fusion : MitelmanFCRL1/RASAL2 [1q23.1/1q25.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCRL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCRL1
dbVarFCRL1
ClinVarFCRL1
1000_GenomesFCRL1 
Exome Variant ServerFCRL1
ExAC (Exome Aggregation Consortium)FCRL1 (select the gene name)
Genetic variants : HAPMAP115350
Genomic Variants (DGV)FCRL1 [DGVbeta]
DECIPHERFCRL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCRL1 
Mutations
ICGC Data PortalFCRL1 
TCGA Data PortalFCRL1 
Broad Tumor PortalFCRL1
OASIS PortalFCRL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCRL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFCRL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCRL1
DgiDB (Drug Gene Interaction Database)FCRL1
DoCM (Curated mutations)FCRL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCRL1 (select a term)
intoGenFCRL1
Cancer3DFCRL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606508   
Orphanet
MedgenFCRL1
Genetic Testing Registry FCRL1
NextProtQ96LA6 [Medical]
TSGene115350
GENETestsFCRL1
Huge Navigator FCRL1 [HugePedia]
snp3D : Map Gene to Disease115350
BioCentury BCIQFCRL1
ClinGenFCRL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115350
Chemical/Pharm GKB GenePA142671766
Clinical trialFCRL1
Miscellaneous
canSAR (ICR)FCRL1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCRL1
EVEXFCRL1
GoPubMedFCRL1
iHOPFCRL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:15:49 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.