Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FCRL5 (Fc receptor like 5)

Identity

Alias (NCBI)BXMAS1
CD307
CD307e
FCRH5
IRTA2
PRO820
HGNC (Hugo) FCRL5
HGNC Alias symbFCRH5
IRTA2
BXMAS1
CD307e
HGNC Previous nameFc receptor-like 5
LocusID (NCBI) 83416
Atlas_Id 40996
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 157513377 and ends at 157552515 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(1;1)(p36;q21) in Non Hodgkin Lymphoma
t(1;14)(q21;q32) FCRL4/IGH
t(1;14)(q21;q32)::t(1;22)(q21;q11)

External links

Nomenclature
HGNC (Hugo)FCRL5   18508
Cards
Entrez_Gene (NCBI)FCRL5  83416  Fc receptor like 5
AliasesBXMAS1; CD307; CD307e; FCRH5; 
IRTA2; PRO820
GeneCards (Weizmann)FCRL5
Ensembl hg19 (Hinxton)ENSG00000143297 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143297 [Gene_View]  ENSG00000143297 [Sequence]  chr1:157513377-157552515 [Contig_View]  FCRL5 [Vega]
ICGC DataPortalENSG00000143297
TCGA cBioPortalFCRL5
AceView (NCBI)FCRL5
Genatlas (Paris)FCRL5
WikiGenes83416
SOURCE (Princeton)FCRL5
Genetics Home Reference (NIH)FCRL5
Genomic and cartography
GoldenPath hg38 (UCSC)FCRL5  -     chr1:157513377-157552515 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FCRL5  -     1q23.1   [Description]    (hg19-Feb_2009)
GoldenPathFCRL5 - 1q23.1 [CytoView hg19]  FCRL5 - 1q23.1 [CytoView hg38]
ImmunoBaseENSG00000143297
genome Data Viewer NCBIFCRL5 [Mapview hg19]  
OMIM605877   
Gene and transcription
Genbank (Entrez)AF343662 AF343663 AF343664 AF343665 AF369794
RefSeq transcript (Entrez)NM_001195388 NM_031281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FCRL5
Alternative Splicing GalleryENSG00000143297
Gene ExpressionFCRL5 [ NCBI-GEO ]   FCRL5 [ EBI - ARRAY_EXPRESS ]   FCRL5 [ SEEK ]   FCRL5 [ MEM ]
Gene Expression Viewer (FireBrowse)FCRL5 [ Firebrowse - Broad ]
GenevisibleExpression of FCRL5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83416
GTEX Portal (Tissue expression)FCRL5
Human Protein AtlasENSG00000143297-FCRL5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RD9
Splice isoforms : SwissVarQ96RD9
PhosPhoSitePlusQ96RD9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)FCRL5
DMDM Disease mutations83416
Blocks (Seattle)FCRL5
SuperfamilyQ96RD9
Human Protein Atlas [tissue]ENSG00000143297-FCRL5 [tissue]
Peptide AtlasQ96RD9
HPRD16169
IPIIPI00290135   IPI00647675   IPI00644064   IPI00738292   IPI00641062   IPI00432728   IPI00386175   IPI00168766   IPI00985142   
Protein Interaction databases
DIP (DOE-UCLA)Q96RD9
IntAct (EBI)Q96RD9
FunCoupENSG00000143297
BioGRIDFCRL5
STRING (EMBL)FCRL5
ZODIACFCRL5
Ontologies - Pathways
QuickGOQ96RD9
Ontology : AmiGOtransmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  cell surface  integral component of membrane  receptor complex  
Ontology : EGO-EBItransmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  cell surface  integral component of membrane  receptor complex  
NDEx NetworkFCRL5
Atlas of Cancer Signalling NetworkFCRL5
Wikipedia pathwaysFCRL5
Orthology - Evolution
OrthoDB83416
GeneTree (enSembl)ENSG00000143297
Phylogenetic Trees/Animal Genes : TreeFamFCRL5
HOGENOMQ96RD9
Homologs : HomoloGeneFCRL5
Homology/Alignments : Family Browser (UCSC)FCRL5
Gene fusions - Rearrangements
Fusion : QuiverFCRL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFCRL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FCRL5
dbVarFCRL5
ClinVarFCRL5
1000_GenomesFCRL5 
Exome Variant ServerFCRL5
GNOMAD BrowserENSG00000143297
Varsome BrowserFCRL5
Genetic variants : HAPMAP83416
Genomic Variants (DGV)FCRL5 [DGVbeta]
DECIPHERFCRL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFCRL5 
Mutations
ICGC Data PortalFCRL5 
TCGA Data PortalFCRL5 
Broad Tumor PortalFCRL5
OASIS PortalFCRL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFCRL5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFCRL5
Mutations and Diseases : HGMDFCRL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FCRL5
DgiDB (Drug Gene Interaction Database)FCRL5
DoCM (Curated mutations)FCRL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FCRL5 (select a term)
intoGenFCRL5
Cancer3DFCRL5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605877   
Orphanet
DisGeNETFCRL5
MedgenFCRL5
Genetic Testing Registry FCRL5
NextProtQ96RD9 [Medical]
TSGene83416
GENETestsFCRL5
Target ValidationFCRL5
Huge Navigator FCRL5 [HugePedia]
snp3D : Map Gene to Disease83416
BioCentury BCIQFCRL5
ClinGenFCRL5
Clinical trials, drugs, therapy
Protein Interactions : CTD83416
Pharm GKB GenePA142671769
Clinical trialFCRL5
Miscellaneous
canSAR (ICR)FCRL5 (select the gene name)
HarmonizomeFCRL5
DataMed IndexFCRL5
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFCRL5
EVEXFCRL5
GoPubMedFCRL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:13:17 CEST 2020
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