Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FDCSP (follicular dendritic cell secreted protein)

Identity

Other namesC4orf7
FDC-SP
HGNC (Hugo) FDCSP
LocusID (NCBI) 260436
Location 4q13.3
Location_base_pair Starts at 71091788 and ends at 71100968 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)FDCSP   19215
Entrez_Gene (NCBI)FDCSP  260436  follicular dendritic cell secreted protein
Cards
GeneCards (Weizmann)FDCSP
Ensembl (Hinxton)ENSG00000181617 [Gene_View]  chr4:71091788-71100968 [Contig_View]  FDCSP [Vega]
AceView (NCBI)FDCSP
Genatlas (Paris)FDCSP
SOURCE (Stanford)NM_152997
Genomic and cartography
GoldenPath (UCSC)FDCSP  -  4q13.3   chr4:71091788-71100968 +  4q13.3   [Description]    (hg19-Feb_2009)
EnsemblFDCSP - 4q13.3 [CytoView]
Mapping of homologs : NCBIFDCSP [Mapview]
OMIM607241   
Gene and transcription
Genbank (Entrez)AF086120 AF435080 AY190326 AY358958 BC062213
RefSeq transcript (SRS)NM_152997
RefSeq transcript (Entrez)NM_152997
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_022778 NW_001838914 NW_004078021
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_022778 NW_001838914 NW_004078021
Consensus coding sequences : CCDS (NCBI)FDCSP
Cluster EST : UnigeneHs.733448 [ SRS ] Hs.733448 [ NCBI ]
CGAP (NCI)Hs.733448
Alternative Splicing : Fast-db (Paris)GSHG0022634
Alternative Splicing GalleryENSG00000181617
Gene ExpressionFDCSP [ NCBI-GEO ]   FDCSP [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFU4 (SRS) Q8NFU4 (Uniprot)
NextProtQ8NFU4
With graphics : InterProQ8NFU4
Splice isoforms : SwissVarQ8NFU4(Swissvar)
Related proteins : CluSTrQ8NFU4
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM260436
Blocks (Seattle)Q8NFU4
Human Protein AtlasENSG00000181617
HPRD06255
IPIIPI00168905   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFU4
IntAct (EBI)Q8NFU4
FunCoupENSG00000181617
REACTOMEFDCSP
Protein Interaction Database260436
BioGRIDFDCSP
InParanoidQ8NFU4
Interologous Interaction database Q8NFU4
IntegromeDBFDCSP
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FDCSP
SNP (GeneSNP Utah)FDCSP
SNP : HGBaseFDCSP
Genetic variants : HAPMAPFDCSP
Mutations and Diseases : HGMDFDCSP
OMIM607241   
GENETests607241   
Disease Genetic AssociationFDCSP
Huge Navigator FDCSP [HugePedia]  FDCSP [HugeCancerGEM]
Genomic VariantsFDCSP  FDCSP [DGVbeta]
snp3D : Map Gene to Disease260436
General knowledge
Homologs : HomoloGeneFDCSP
Homology/Alignments : Family Browser (UCSC)FDCSP
Phylogenetic Trees/Animal Genes : TreeFamFDCSP
Chemical/Protein Interactions : CTD260436
Chemical/Pharm GKB GenePA134922601
Clinical trialFDCSP
Cancer Resource (Charite)ENSG00000181617
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneFDCSP
iHOPFDCSP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:40 CEST 2013
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