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FDCSP (follicular dendritic cell secreted protein)

Identity

Alias_namesC4orf7
chromosome 4 open reading frame 7
Alias_symbol (synonym)FDC-SP
Other alias
HGNC (Hugo) FDCSP
LocusID (NCBI) 260436
Atlas_Id 52066
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70226071 and ends at 70235251 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SAMD12 (8q24.12) / FDCSP (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links|/TF>

Nomenclature
HGNC (Hugo)FDCSP   19215
Cards
Entrez_Gene (NCBI)FDCSP  260436  follicular dendritic cell secreted protein
AliasesC4orf7; FDC-SP
GeneCards (Weizmann)FDCSP
Ensembl hg19 (Hinxton)ENSG00000181617 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181617 [Gene_View]  chr4:70226071-70235251 [Contig_View]  FDCSP [Vega]
ICGC DataPortalENSG00000181617
TCGA cBioPortalFDCSP
AceView (NCBI)FDCSP
Genatlas (Paris)FDCSP
WikiGenes260436
SOURCE (Princeton)FDCSP
Genetics Home Reference (NIH)FDCSP
Genomic and cartography
GoldenPath hg38 (UCSC)FDCSP  -     chr4:70226071-70235251 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FDCSP  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblFDCSP - 4q13.3 [CytoView hg19]  FDCSP - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIFDCSP [Mapview hg19]  FDCSP [Mapview hg38]
OMIM607241   
Gene and transcription
Genbank (Entrez)AF086120 AF435080 AY190326 AY358958 BC062213
RefSeq transcript (Entrez)NM_152997
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FDCSP
Cluster EST : UnigeneHs.733448 [ NCBI ]
CGAP (NCI)Hs.733448
Alternative Splicing GalleryENSG00000181617
Gene ExpressionFDCSP [ NCBI-GEO ]   FDCSP [ EBI - ARRAY_EXPRESS ]   FDCSP [ SEEK ]   FDCSP [ MEM ]
Gene Expression Viewer (FireBrowse)FDCSP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)260436
GTEX Portal (Tissue expression)FDCSP
Human Protein AtlasENSG00000181617-FDCSP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFU4
Splice isoforms : SwissVarQ8NFU4
PhosPhoSitePlusQ8NFU4
Domains : Interpro (EBI)FDC-SP   
Domain families : Pfam (Sanger)FDC-SP (PF15215)   
Domain families : Pfam (NCBI)pfam15215   
Conserved Domain (NCBI)FDCSP
DMDM Disease mutations260436
Blocks (Seattle)FDCSP
SuperfamilyQ8NFU4
Human Protein Atlas [tissue]ENSG00000181617-FDCSP [tissue]
Peptide AtlasQ8NFU4
HPRD06255
IPIIPI00168905   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFU4
IntAct (EBI)Q8NFU4
FunCoupENSG00000181617
BioGRIDFDCSP
STRING (EMBL)FDCSP
ZODIACFDCSP
Ontologies - Pathways
QuickGOQ8NFU4
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkFDCSP
Atlas of Cancer Signalling NetworkFDCSP
Wikipedia pathwaysFDCSP
Orthology - Evolution
OrthoDB260436
GeneTree (enSembl)ENSG00000181617
Phylogenetic Trees/Animal Genes : TreeFamFDCSP
HOVERGENQ8NFU4
HOGENOMQ8NFU4
Homologs : HomoloGeneFDCSP
Homology/Alignments : Family Browser (UCSC)FDCSP
Gene fusions - Rearrangements
Fusion : MitelmanSAMD12/FDCSP [8q24.12/4q13.3]  [t(4;8)(q13;q24)]  
Tumor Fusion PortalFDCSP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFDCSP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FDCSP
dbVarFDCSP
ClinVarFDCSP
1000_GenomesFDCSP 
Exome Variant ServerFDCSP
ExAC (Exome Aggregation Consortium)ENSG00000181617
GNOMAD BrowserENSG00000181617
Genetic variants : HAPMAP260436
Genomic Variants (DGV)FDCSP [DGVbeta]
DECIPHERFDCSP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFDCSP 
Mutations
ICGC Data PortalFDCSP 
TCGA Data PortalFDCSP 
Broad Tumor PortalFDCSP
OASIS PortalFDCSP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFDCSP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FDCSP
DgiDB (Drug Gene Interaction Database)FDCSP
DoCM (Curated mutations)FDCSP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FDCSP (select a term)
intoGenFDCSP
Cancer3DFDCSP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607241   
Orphanet
DisGeNETFDCSP
MedgenFDCSP
Genetic Testing Registry FDCSP
NextProtQ8NFU4 [Medical]
TSGene260436
GENETestsFDCSP
Target ValidationFDCSP
Huge Navigator FDCSP [HugePedia]
snp3D : Map Gene to Disease260436
BioCentury BCIQFDCSP
ClinGenFDCSP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD260436
Chemical/Pharm GKB GenePA134922601
Clinical trialFDCSP
Miscellaneous
canSAR (ICR)FDCSP (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFDCSP
EVEXFDCSP
GoPubMedFDCSP
iHOPFDCSP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:13:10 CET 2017

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