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FDX1L (ferredoxin 1 like)

Identity

Other aliasFDX2
HGNC (Hugo) FDX1L
LocusID (NCBI) 112812
Atlas_Id 63353
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10310211 and ends at 10316015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNM2 (19p13.2) / FDX1L (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FDX1L   30546
Cards
Entrez_Gene (NCBI)FDX1L  112812  ferredoxin 1 like
AliasesFDX2
GeneCards (Weizmann)FDX1L
Ensembl hg19 (Hinxton)ENSG00000267673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267673 [Gene_View]  chr19:10310211-10316015 [Contig_View]  FDX1L [Vega]
ICGC DataPortalENSG00000267673
TCGA cBioPortalFDX1L
AceView (NCBI)FDX1L
Genatlas (Paris)FDX1L
WikiGenes112812
SOURCE (Princeton)FDX1L
Genetics Home Reference (NIH)FDX1L
Genomic and cartography
GoldenPath hg38 (UCSC)FDX1L  -     chr19:10310211-10316015 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FDX1L  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblFDX1L - 19p13.2 [CytoView hg19]  FDX1L - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIFDX1L [Mapview hg19]  FDX1L [Mapview hg38]
OMIM614585   
Gene and transcription
Genbank (Entrez)AI289404 AK300568 AW245043 BC010155 BC063460
RefSeq transcript (Entrez)NM_001031734 NM_080665
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FDX1L
Cluster EST : UnigeneHs.654865 [ NCBI ]
CGAP (NCI)Hs.654865
Alternative Splicing GalleryENSG00000267673
Gene ExpressionFDX1L [ NCBI-GEO ]   FDX1L [ EBI - ARRAY_EXPRESS ]   FDX1L [ SEEK ]   FDX1L [ MEM ]
Gene Expression Viewer (FireBrowse)FDX1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112812
GTEX Portal (Tissue expression)FDX1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4F2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4F2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4F2
Splice isoforms : SwissVarQ6P4F2
PhosPhoSitePlusQ6P4F2
Domaine pattern : Prosite (Expaxy)2FE2S_FER_2 (PS51085)    ADX (PS00814)   
Domains : Interpro (EBI)2Fe-2S_ferredoxin-type    Adrenodoxin    Adrenodoxin_Fe-S_BS    Beta-grasp_dom   
Domain families : Pfam (Sanger)Fer2 (PF00111)   
Domain families : Pfam (NCBI)pfam00111   
Conserved Domain (NCBI)FDX1L
DMDM Disease mutations112812
Blocks (Seattle)FDX1L
PDB (SRS)2Y5C   
PDB (PDBSum)2Y5C   
PDB (IMB)2Y5C   
PDB (RSDB)2Y5C   
Structural Biology KnowledgeBase2Y5C   
SCOP (Structural Classification of Proteins)2Y5C   
CATH (Classification of proteins structures)2Y5C   
SuperfamilyQ6P4F2
Human Protein AtlasENSG00000267673
Peptide AtlasQ6P4F2
HPRD14465
IPIIPI00894257   IPI00167433   IPI00893976   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4F2
IntAct (EBI)Q6P4F2
FunCoupENSG00000267673
BioGRIDFDX1L
STRING (EMBL)FDX1L
ZODIACFDX1L
Ontologies - Pathways
QuickGOQ6P4F2
Ontology : AmiGOprotein binding  mitochondrial matrix  C21-steroid hormone biosynthetic process  electron carrier activity  sterol metabolic process  small molecule metabolic process  metal ion binding  2 iron, 2 sulfur cluster binding  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  mitochondrial matrix  C21-steroid hormone biosynthetic process  electron carrier activity  sterol metabolic process  small molecule metabolic process  metal ion binding  2 iron, 2 sulfur cluster binding  oxidation-reduction process  
NDEx NetworkFDX1L
Atlas of Cancer Signalling NetworkFDX1L
Wikipedia pathwaysFDX1L
Orthology - Evolution
OrthoDB112812
GeneTree (enSembl)ENSG00000267673
Phylogenetic Trees/Animal Genes : TreeFamFDX1L
HOVERGENQ6P4F2
HOGENOMQ6P4F2
Homologs : HomoloGeneFDX1L
Homology/Alignments : Family Browser (UCSC)FDX1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFDX1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FDX1L
dbVarFDX1L
ClinVarFDX1L
1000_GenomesFDX1L 
Exome Variant ServerFDX1L
ExAC (Exome Aggregation Consortium)FDX1L (select the gene name)
Genetic variants : HAPMAP112812
Genomic Variants (DGV)FDX1L [DGVbeta]
DECIPHERFDX1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFDX1L 
Mutations
ICGC Data PortalFDX1L 
TCGA Data PortalFDX1L 
Broad Tumor PortalFDX1L
OASIS PortalFDX1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFDX1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFDX1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FDX1L
DgiDB (Drug Gene Interaction Database)FDX1L
DoCM (Curated mutations)FDX1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FDX1L (select a term)
intoGenFDX1L
Cancer3DFDX1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614585   
Orphanet
MedgenFDX1L
Genetic Testing Registry FDX1L
NextProtQ6P4F2 [Medical]
TSGene112812
GENETestsFDX1L
Target ValidationFDX1L
Huge Navigator FDX1L [HugePedia]
snp3D : Map Gene to Disease112812
BioCentury BCIQFDX1L
ClinGenFDX1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112812
Chemical/Pharm GKB GenePA162388212
Clinical trialFDX1L
Miscellaneous
canSAR (ICR)FDX1L (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFDX1L
EVEXFDX1L
GoPubMedFDX1L
iHOPFDX1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:25 CEST 2017

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