Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FDX2 (ferredoxin 2)

Identity

Alias (NCBI)FDX1L
MEOAL
HGNC (Hugo) FDX2
LocusID (NCBI) 112812
Atlas_Id 80553
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10310211 and ends at 10316015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)FDX2   30546
Cards
Entrez_Gene (NCBI)FDX2    ferredoxin 2
AliasesFDX1L; MEOAL
GeneCards (Weizmann)FDX2
Ensembl hg19 (Hinxton)ENSG00000267673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267673 [Gene_View]  ENSG00000267673 [Sequence]  chr19:10310211-10316015 [Contig_View]  FDX2 [Vega]
ICGC DataPortalENSG00000267673
TCGA cBioPortalFDX2
AceView (NCBI)FDX2
Genatlas (Paris)FDX2
SOURCE (Princeton)FDX2
Genetics Home Reference (NIH)FDX2
Genomic and cartography
GoldenPath hg38 (UCSC)FDX2  -     chr19:10310211-10316015 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FDX2  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathFDX2 - 19p13.2 [CytoView hg19]  FDX2 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000267673
genome Data Viewer NCBIFDX2 [Mapview hg19]  
OMIM251900   614585   
Gene and transcription
Genbank (Entrez)AI289404 AK300568 AW245043 BC010155 BC063460
RefSeq transcript (Entrez)NM_001031734 NM_080665
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FDX2
Alternative Splicing GalleryENSG00000267673
Gene ExpressionFDX2 [ NCBI-GEO ]   FDX2 [ EBI - ARRAY_EXPRESS ]   FDX2 [ SEEK ]   FDX2 [ MEM ]
Gene Expression Viewer (FireBrowse)FDX2 [ Firebrowse - Broad ]
GenevisibleExpression of FDX2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112812
GTEX Portal (Tissue expression)FDX2
Human Protein AtlasENSG00000267673-FDX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4F2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4F2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4F2
Splice isoforms : SwissVarQ6P4F2
PhosPhoSitePlusQ6P4F2
Domaine pattern : Prosite (Expaxy)2FE2S_FER_2 (PS51085)    ADX (PS00814)   
Domains : Interpro (EBI)2Fe-2S_ferredoxin-like_sf    2Fe-2S_ferredoxin-type    Adrenodoxin    Adrenodoxin_Fe-S_BS    Beta-grasp_dom_sf   
Domain families : Pfam (Sanger)Fer2 (PF00111)   
Domain families : Pfam (NCBI)pfam00111   
Conserved Domain (NCBI)FDX2
Blocks (Seattle)FDX2
PDB (RSDB)2Y5C   
PDB Europe2Y5C   
PDB (PDBSum)2Y5C   
PDB (IMB)2Y5C   
Structural Biology KnowledgeBase2Y5C   
SCOP (Structural Classification of Proteins)2Y5C   
CATH (Classification of proteins structures)2Y5C   
SuperfamilyQ6P4F2
Human Protein Atlas [tissue]ENSG00000267673-FDX2 [tissue]
Peptide AtlasQ6P4F2
IPIIPI00894257   IPI00167433   IPI00893976   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4F2
IntAct (EBI)Q6P4F2
BioGRIDFDX2
STRING (EMBL)FDX2
ZODIACFDX2
Ontologies - Pathways
QuickGOQ6P4F2
Ontology : AmiGOprotein binding  mitochondrial matrix  C21-steroid hormone biosynthetic process  electron transfer activity  sterol metabolic process  electron transport chain  small molecule metabolic process  metal ion binding  2 iron, 2 sulfur cluster binding  
Ontology : EGO-EBIprotein binding  mitochondrial matrix  C21-steroid hormone biosynthetic process  electron transfer activity  sterol metabolic process  electron transport chain  small molecule metabolic process  metal ion binding  2 iron, 2 sulfur cluster binding  
NDEx NetworkFDX2
Atlas of Cancer Signalling NetworkFDX2
Wikipedia pathwaysFDX2
Orthology - Evolution
OrthoDB112812
GeneTree (enSembl)ENSG00000267673
Phylogenetic Trees/Animal Genes : TreeFamFDX2
HOGENOMQ6P4F2
Homologs : HomoloGeneFDX2
Homology/Alignments : Family Browser (UCSC)FDX2
Gene fusions - Rearrangements
Fusion : QuiverFDX2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFDX2 [hg38]
dbVarFDX2
ClinVarFDX2
MonarchFDX2
1000_GenomesFDX2 
Exome Variant ServerFDX2
GNOMAD BrowserENSG00000267673
Varsome BrowserFDX2
Genomic Variants (DGV)FDX2 [DGVbeta]
DECIPHERFDX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFDX2 
Mutations
ICGC Data PortalFDX2 
TCGA Data PortalFDX2 
Broad Tumor PortalFDX2
OASIS PortalFDX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFDX2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFDX2
Mutations and Diseases : HGMDFDX2
BioMutasearch FDX2
DgiDB (Drug Gene Interaction Database)FDX2
DoCM (Curated mutations)FDX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FDX2 (select a term)
intoGenFDX2
Cancer3DFDX2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM251900    614585   
Orphanet
DisGeNETFDX2
MedgenFDX2
Genetic Testing Registry FDX2
NextProtQ6P4F2 [Medical]
GENETestsFDX2
Target ValidationFDX2
Huge Navigator FDX2 [HugePedia]
ClinGenFDX2
Clinical trials, drugs, therapy
MyCancerGenomeFDX2
Protein Interactions : CTD
Pharm GKB GenePA162388212
Clinical trialFDX2
Miscellaneous
canSAR (ICR)FDX2 (select the gene name)
HarmonizomeFDX2
DataMed IndexFDX2
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFDX2
EVEXFDX2
GoPubMedFDX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:54:32 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.