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FDXACB1 (ferredoxin-fold anticodon binding domain containing 1)

Identity

Alias_symbol (synonym)LOC91893
hCG_2033039
Other alias
HGNC (Hugo) FDXACB1
LocusID (NCBI) 91893
Atlas_Id 63354
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111874056 and ends at 111879457 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FDXACB1 (11q23.1) / CRYAB (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FDXACB1   25110
Cards
Entrez_Gene (NCBI)FDXACB1  91893  ferredoxin-fold anticodon binding domain containing 1
AliaseshCG_2033039
GeneCards (Weizmann)FDXACB1
Ensembl hg19 (Hinxton)ENSG00000255561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255561 [Gene_View]  chr11:111874056-111879457 [Contig_View]  FDXACB1 [Vega]
ICGC DataPortalENSG00000255561
TCGA cBioPortalFDXACB1
AceView (NCBI)FDXACB1
Genatlas (Paris)FDXACB1
WikiGenes91893
SOURCE (Princeton)FDXACB1
Genetics Home Reference (NIH)FDXACB1
Genomic and cartography
GoldenPath hg38 (UCSC)FDXACB1  -     chr11:111874056-111879457 -  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FDXACB1  -     11q23.1   [Description]    (hg19-Feb_2009)
EnsemblFDXACB1 - 11q23.1 [CytoView hg19]  FDXACB1 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIFDXACB1 [Mapview hg19]  FDXACB1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097483 AK300795 AK311254 AW296845 BC006136
RefSeq transcript (Entrez)NM_138378
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FDXACB1
Cluster EST : UnigeneHs.697132 [ NCBI ]
CGAP (NCI)Hs.697132
Alternative Splicing GalleryENSG00000255561
Gene ExpressionFDXACB1 [ NCBI-GEO ]   FDXACB1 [ EBI - ARRAY_EXPRESS ]   FDXACB1 [ SEEK ]   FDXACB1 [ MEM ]
Gene Expression Viewer (FireBrowse)FDXACB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91893
GTEX Portal (Tissue expression)FDXACB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRP7
Splice isoforms : SwissVarQ9BRP7
PhosPhoSitePlusQ9BRP7
Domaine pattern : Prosite (Expaxy)FDX_ACB (PS51447)   
Domains : Interpro (EBI)DUF2431    Fdx_antiC-bd   
Domain families : Pfam (Sanger)DUF2431 (PF10354)    FDX-ACB (PF03147)   
Domain families : Pfam (NCBI)pfam10354    pfam03147   
Domain families : Smart (EMBL)FDX-ACB (SM00896)  
Conserved Domain (NCBI)FDXACB1
DMDM Disease mutations91893
Blocks (Seattle)FDXACB1
SuperfamilyQ9BRP7
Human Protein AtlasENSG00000255561
Peptide AtlasQ9BRP7
IPIIPI00305091   IPI00979019   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRP7
IntAct (EBI)Q9BRP7
FunCoupENSG00000255561
BioGRIDFDXACB1
STRING (EMBL)FDXACB1
ZODIACFDXACB1
Ontologies - Pathways
QuickGOQ9BRP7
Ontology : AmiGOphenylalanine-tRNA ligase activity  protein binding  phenylalanyl-tRNA aminoacylation  phenylalanine-tRNA ligase complex  
Ontology : EGO-EBIphenylalanine-tRNA ligase activity  protein binding  phenylalanyl-tRNA aminoacylation  phenylalanine-tRNA ligase complex  
NDEx NetworkFDXACB1
Atlas of Cancer Signalling NetworkFDXACB1
Wikipedia pathwaysFDXACB1
Orthology - Evolution
OrthoDB91893
GeneTree (enSembl)ENSG00000255561
Phylogenetic Trees/Animal Genes : TreeFamFDXACB1
HOVERGENQ9BRP7
HOGENOMQ9BRP7
Homologs : HomoloGeneFDXACB1
Homology/Alignments : Family Browser (UCSC)FDXACB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFDXACB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FDXACB1
dbVarFDXACB1
ClinVarFDXACB1
1000_GenomesFDXACB1 
Exome Variant ServerFDXACB1
ExAC (Exome Aggregation Consortium)FDXACB1 (select the gene name)
Genetic variants : HAPMAP91893
Genomic Variants (DGV)FDXACB1 [DGVbeta]
DECIPHERFDXACB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFDXACB1 
Mutations
ICGC Data PortalFDXACB1 
TCGA Data PortalFDXACB1 
Broad Tumor PortalFDXACB1
OASIS PortalFDXACB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFDXACB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFDXACB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FDXACB1
DgiDB (Drug Gene Interaction Database)FDXACB1
DoCM (Curated mutations)FDXACB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FDXACB1 (select a term)
intoGenFDXACB1
Cancer3DFDXACB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFDXACB1
Genetic Testing Registry FDXACB1
NextProtQ9BRP7 [Medical]
TSGene91893
GENETestsFDXACB1
Target ValidationFDXACB1
Huge Navigator FDXACB1 [HugePedia]
snp3D : Map Gene to Disease91893
BioCentury BCIQFDXACB1
ClinGenFDXACB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91893
Chemical/Pharm GKB GenePA164720055
Clinical trialFDXACB1
Miscellaneous
canSAR (ICR)FDXACB1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFDXACB1
EVEXFDXACB1
GoPubMedFDXACB1
iHOPFDXACB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:07 CEST 2017

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