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FDXR (ferredoxin reductase)

Identity

Alias_namesADXR
Other alias
HGNC (Hugo) FDXR
LocusID (NCBI) 2232
Atlas_Id 46873
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74862497 and ends at 74873031 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FDXR (17q25.1) / GARNL3 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FDXR   3642
Cards
Entrez_Gene (NCBI)FDXR  2232  ferredoxin reductase
AliasesADXR
GeneCards (Weizmann)FDXR
Ensembl hg19 (Hinxton)ENSG00000161513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161513 [Gene_View]  chr17:74862497-74873031 [Contig_View]  FDXR [Vega]
ICGC DataPortalENSG00000161513
TCGA cBioPortalFDXR
AceView (NCBI)FDXR
Genatlas (Paris)FDXR
WikiGenes2232
SOURCE (Princeton)FDXR
Genetics Home Reference (NIH)FDXR
Genomic and cartography
GoldenPath hg38 (UCSC)FDXR  -     chr17:74862497-74873031 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FDXR  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblFDXR - 17q25.1 [CytoView hg19]  FDXR - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIFDXR [Mapview hg19]  FDXR [Mapview hg38]
OMIM103270   
Gene and transcription
Genbank (Entrez)AK094120 AK098648 AK223530 AK293208 AK293210
RefSeq transcript (Entrez)NM_001258012 NM_001258013 NM_001258014 NM_001258015 NM_001258016 NM_004110 NM_024417
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FDXR
Cluster EST : UnigeneHs.69745 [ NCBI ]
CGAP (NCI)Hs.69745
Alternative Splicing GalleryENSG00000161513
Gene ExpressionFDXR [ NCBI-GEO ]   FDXR [ EBI - ARRAY_EXPRESS ]   FDXR [ SEEK ]   FDXR [ MEM ]
Gene Expression Viewer (FireBrowse)FDXR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2232
GTEX Portal (Tissue expression)FDXR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22570   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22570  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22570
Splice isoforms : SwissVarP22570
Catalytic activity : Enzyme1.18.1.6 [ Enzyme-Expasy ]   1.18.1.61.18.1.6 [ IntEnz-EBI ]   1.18.1.6 [ BRENDA ]   1.18.1.6 [ KEGG ]   
PhosPhoSitePlusP22570
Domains : Interpro (EBI)FAD/NAD-binding_dom    Ferredox_Rdtase_adrenod    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)Pyr_redox_2 (PF07992)   
Domain families : Pfam (NCBI)pfam07992   
Conserved Domain (NCBI)FDXR
DMDM Disease mutations2232
Blocks (Seattle)FDXR
SuperfamilyP22570
Human Protein AtlasENSG00000161513
Peptide AtlasP22570
HPRD00060
IPIIPI00026958   IPI00221118   IPI00903185   IPI00910128   IPI00911050   IPI00790677   
Protein Interaction databases
DIP (DOE-UCLA)P22570
IntAct (EBI)P22570
FunCoupENSG00000161513
BioGRIDFDXR
STRING (EMBL)FDXR
ZODIACFDXR
Ontologies - Pathways
QuickGOP22570
Ontology : AmiGOferredoxin-NADP+ reductase activity  protein binding  mitochondrion  mitochondrial matrix  generation of precursor metabolites and energy  steroid biosynthetic process  C21-steroid hormone biosynthetic process  cholesterol metabolic process  NADPH-adrenodoxin reductase activity  sterol metabolic process  oxidation-reduction process  
Ontology : EGO-EBIferredoxin-NADP+ reductase activity  protein binding  mitochondrion  mitochondrial matrix  generation of precursor metabolites and energy  steroid biosynthetic process  C21-steroid hormone biosynthetic process  cholesterol metabolic process  NADPH-adrenodoxin reductase activity  sterol metabolic process  oxidation-reduction process  
NDEx NetworkFDXR
Atlas of Cancer Signalling NetworkFDXR
Wikipedia pathwaysFDXR
Orthology - Evolution
OrthoDB2232
GeneTree (enSembl)ENSG00000161513
Phylogenetic Trees/Animal Genes : TreeFamFDXR
HOVERGENP22570
HOGENOMP22570
Homologs : HomoloGeneFDXR
Homology/Alignments : Family Browser (UCSC)FDXR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFDXR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FDXR
dbVarFDXR
ClinVarFDXR
1000_GenomesFDXR 
Exome Variant ServerFDXR
ExAC (Exome Aggregation Consortium)FDXR (select the gene name)
Genetic variants : HAPMAP2232
Genomic Variants (DGV)FDXR [DGVbeta]
DECIPHERFDXR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFDXR 
Mutations
ICGC Data PortalFDXR 
TCGA Data PortalFDXR 
Broad Tumor PortalFDXR
OASIS PortalFDXR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFDXR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFDXR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch FDXR
DgiDB (Drug Gene Interaction Database)FDXR
DoCM (Curated mutations)FDXR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FDXR (select a term)
intoGenFDXR
Cancer3DFDXR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM103270   
Orphanet
MedgenFDXR
Genetic Testing Registry FDXR
NextProtP22570 [Medical]
TSGene2232
GENETestsFDXR
Target ValidationFDXR
Huge Navigator FDXR [HugePedia]
snp3D : Map Gene to Disease2232
BioCentury BCIQFDXR
ClinGenFDXR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2232
Chemical/Pharm GKB GenePA28086
Clinical trialFDXR
Miscellaneous
canSAR (ICR)FDXR (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFDXR
EVEXFDXR
GoPubMedFDXR
iHOPFDXR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:47 CEST 2017

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