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FEM1A (fem-1 homolog A)

Identity

Alias_namesfem-1 homolog a (C. elegans)
Other aliasEPRAP
HGNC (Hugo) FEM1A
LocusID (NCBI) 55527
Atlas_Id 43672
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4791716 and ends at 4795559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARPC4-TTLL3 (3p25.3) / FEM1A (19p13.3)FEM1A (19p13.3) / LOC493754 ()MIAT (22q12.1) / FEM1A (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FEM1A   16934
Cards
Entrez_Gene (NCBI)FEM1A  55527  fem-1 homolog A
AliasesEPRAP
GeneCards (Weizmann)FEM1A
Ensembl hg19 (Hinxton)ENSG00000141965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141965 [Gene_View]  ENSG00000141965 [Sequence]  chr19:4791716-4795559 [Contig_View]  FEM1A [Vega]
ICGC DataPortalENSG00000141965
TCGA cBioPortalFEM1A
AceView (NCBI)FEM1A
Genatlas (Paris)FEM1A
WikiGenes55527
SOURCE (Princeton)FEM1A
Genetics Home Reference (NIH)FEM1A
Genomic and cartography
GoldenPath hg38 (UCSC)FEM1A  -     chr19:4791716-4795559 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FEM1A  -     19p13.3   [Description]    (hg19-Feb_2009)
FEM1A - 19p13.3 [CytoView hg19]  FEM1A - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIFEM1A [Mapview hg19]  FEM1A [Mapview hg38]
OMIM613538   
Gene and transcription
Genbank (Entrez)AJ311359 AK074232 AK126532 AK315554 AL359589
RefSeq transcript (Entrez)NM_018708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FEM1A
Cluster EST : UnigeneHs.515082 [ NCBI ]
CGAP (NCI)Hs.515082
Alternative Splicing GalleryENSG00000141965
Gene ExpressionFEM1A [ NCBI-GEO ]   FEM1A [ EBI - ARRAY_EXPRESS ]   FEM1A [ SEEK ]   FEM1A [ MEM ]
Gene Expression Viewer (FireBrowse)FEM1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55527
GTEX Portal (Tissue expression)FEM1A
Human Protein AtlasENSG00000141965-FEM1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSK4
Splice isoforms : SwissVarQ9BSK4
PhosPhoSitePlusQ9BSK4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)FEM1A
DMDM Disease mutations55527
Blocks (Seattle)FEM1A
SuperfamilyQ9BSK4
Human Protein Atlas [tissue]ENSG00000141965-FEM1A [tissue]
Peptide AtlasQ9BSK4
HPRD16888
IPIIPI00013226   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSK4
IntAct (EBI)Q9BSK4
FunCoupENSG00000141965
BioGRIDFEM1A
STRING (EMBL)FEM1A
ZODIACFEM1A
Ontologies - Pathways
QuickGOQ9BSK4
Ontology : AmiGOubiquitin-protein transferase activity  cytosol  protein ubiquitination  EP4 subtype prostaglandin E2 receptor binding  post-translational protein modification  negative regulation of inflammatory response  regulation of ubiquitin-protein transferase activity  
Ontology : EGO-EBIubiquitin-protein transferase activity  cytosol  protein ubiquitination  EP4 subtype prostaglandin E2 receptor binding  post-translational protein modification  negative regulation of inflammatory response  regulation of ubiquitin-protein transferase activity  
NDEx NetworkFEM1A
Atlas of Cancer Signalling NetworkFEM1A
Wikipedia pathwaysFEM1A
Orthology - Evolution
OrthoDB55527
GeneTree (enSembl)ENSG00000141965
Phylogenetic Trees/Animal Genes : TreeFamFEM1A
HOGENOMQ9BSK4
Homologs : HomoloGeneFEM1A
Homology/Alignments : Family Browser (UCSC)FEM1A
Gene fusions - Rearrangements
Fusion : QuiverFEM1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFEM1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FEM1A
dbVarFEM1A
ClinVarFEM1A
1000_GenomesFEM1A 
Exome Variant ServerFEM1A
ExAC (Exome Aggregation Consortium)ENSG00000141965
GNOMAD BrowserENSG00000141965
Varsome BrowserFEM1A
Genetic variants : HAPMAP55527
Genomic Variants (DGV)FEM1A [DGVbeta]
DECIPHERFEM1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFEM1A 
Mutations
ICGC Data PortalFEM1A 
TCGA Data PortalFEM1A 
Broad Tumor PortalFEM1A
OASIS PortalFEM1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFEM1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFEM1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FEM1A
DgiDB (Drug Gene Interaction Database)FEM1A
DoCM (Curated mutations)FEM1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FEM1A (select a term)
intoGenFEM1A
Cancer3DFEM1A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613538   
Orphanet
DisGeNETFEM1A
MedgenFEM1A
Genetic Testing Registry FEM1A
NextProtQ9BSK4 [Medical]
TSGene55527
GENETestsFEM1A
Target ValidationFEM1A
Huge Navigator FEM1A [HugePedia]
snp3D : Map Gene to Disease55527
BioCentury BCIQFEM1A
ClinGenFEM1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55527
Chemical/Pharm GKB GenePA134940973
Clinical trialFEM1A
Miscellaneous
canSAR (ICR)FEM1A (select the gene name)
DataMed IndexFEM1A
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFEM1A
EVEXFEM1A
GoPubMedFEM1A
iHOPFEM1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu May 2 12:48:59 CEST 2019

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