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FEM1A (fem-1 homolog a (C. elegans))

Identity

Other namesEPRAP
HGNC (Hugo) FEM1A
LocusID (NCBI) 55527
Location 19p13.3
Location_base_pair Starts at 4791728 and ends at 4795571 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FEM1A   16934
Entrez_Gene (NCBI)FEM1A  55527  fem-1 homolog a (C. elegans)
Cards
GeneCards (Weizmann)FEM1A
Ensembl (Hinxton)ENSG00000141965 [Gene_View]  chr19:4791728-4795571 [Contig_View]  FEM1A [Vega]
AceView (NCBI)FEM1A
Genatlas (Paris)FEM1A
SOURCE (Stanford)NM_018708
Genomic and cartography
GoldenPath (UCSC)FEM1A  -  19p13.3   chr19:4791728-4795571 +  19p13.3   [Description]    (hg19-Feb_2009)
EnsemblFEM1A - 19p13.3 [CytoView]
Mapping of homologs : NCBIFEM1A [Mapview]
OMIM613538   
Gene and transcription
Genbank (Entrez)AJ311359 AK074232 AK126532 AK315554 AL359589
RefSeq transcript (SRS)NM_018708
RefSeq transcript (Entrez)NM_018708
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011255 NW_001838477 NW_004078096
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011255 NW_001838477 NW_004078096
Consensus coding sequences : CCDS (NCBI)FEM1A
Cluster EST : UnigeneHs.515082 [ SRS ] Hs.515082 [ NCBI ]
CGAP (NCI)Hs.515082
Alternative Splicing : Fast-db (Paris)GSHG0014488
Alternative Splicing GalleryENSG00000141965
Gene ExpressionFEM1A [ NCBI-GEO ]   FEM1A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSK4 (SRS) Q9BSK4 (Uniprot)
NextProtQ9BSK4
With graphics : InterProQ9BSK4
Splice isoforms : SwissVarQ9BSK4(Swissvar)
Domaine pattern : Prosite (SRS)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    TPR (PS50005)    TPR_REGION (PS50293)   
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (SRS)Ankyrin_rpt    Ankyrin_rpt-contain_dom    TPR-like_helical   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    TPR-like_helical   
Related proteins : CluSTrQ9BSK4
Domain families : Pfam (SRS)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
DMDM55527
Blocks (Seattle)Q9BSK4
Human Protein AtlasENSG00000141965
HPRD16888
IPIIPI00013226   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSK4
IntAct (EBI)Q9BSK4
FunCoupENSG00000141965
REACTOMEFEM1A
Protein Interaction Database55527
BioGRIDFEM1A
InParanoidQ9BSK4
Interologous Interaction database Q9BSK4
IntegromeDBFEM1A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FEM1A
SNP (GeneSNP Utah)FEM1A
SNP : HGBaseFEM1A
Genetic variants : HAPMAPFEM1A
Somatic Mutations in Cancer : COSMICFEM1A 
CONAN: Copy Number AnalysisFEM1A 
Mutations and Diseases : HGMDFEM1A
OMIM613538   
GENETests613538   
Disease Genetic AssociationFEM1A
Huge Navigator FEM1A [HugePedia]  FEM1A [HugeCancerGEM]
Genomic VariantsFEM1A  FEM1A [DGVbeta]
snp3D : Map Gene to Disease55527
General knowledge
Homologs : HomoloGeneFEM1A
Homology/Alignments : Family Browser (UCSC)FEM1A
Phylogenetic Trees/Animal Genes : TreeFamFEM1A
Chemical/Protein Interactions : CTD55527
Chemical/Pharm GKB GenePA134940973
Clinical trialFEM1A
Cancer Resource (Charite)ENSG00000141965
Ontology : AmiGOubiquitin-protein ligase activity  cytoplasm  EP4 subtype prostaglandin E2 receptor binding  negative regulation of inflammatory response  regulation of ubiquitin-protein ligase activity  
Ontology : EGO-EBIubiquitin-protein ligase activity  cytoplasm  EP4 subtype prostaglandin E2 receptor binding  negative regulation of inflammatory response  regulation of ubiquitin-protein ligase activity  
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneFEM1A
iHOPFEM1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:33:15 CEST 2013
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