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FEM1C (fem-1 homolog C)

Identity

Alias_namesfem-1 homolog c (C. elegans)
Alias_symbol (synonym)KIAA1785
EUROIMAGE686608
EUROIMAGE783647
FEM1A
Other alias
HGNC (Hugo) FEM1C
LocusID (NCBI) 56929
Atlas_Id 63356
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 115520911 and ends at 115544894 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKNAD1 (1p13.3) / FEM1C (5q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FEM1C   16933
Cards
Entrez_Gene (NCBI)FEM1C  56929  fem-1 homolog C
AliasesEUROIMAGE686608; EUROIMAGE783647; FEM1A
GeneCards (Weizmann)FEM1C
Ensembl hg19 (Hinxton)ENSG00000145780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145780 [Gene_View]  chr5:115520911-115544894 [Contig_View]  FEM1C [Vega]
ICGC DataPortalENSG00000145780
TCGA cBioPortalFEM1C
AceView (NCBI)FEM1C
Genatlas (Paris)FEM1C
WikiGenes56929
SOURCE (Princeton)FEM1C
Genetics Home Reference (NIH)FEM1C
Genomic and cartography
GoldenPath hg38 (UCSC)FEM1C  -     chr5:115520911-115544894 -  5q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FEM1C  -     5q22.3   [Description]    (hg19-Feb_2009)
EnsemblFEM1C - 5q22.3 [CytoView hg19]  FEM1C - 5q22.3 [CytoView hg38]
Mapping of homologs : NCBIFEM1C [Mapview hg19]  FEM1C [Mapview hg38]
OMIM608767   
Gene and transcription
Genbank (Entrez)AB058688 AF391093 AK025265 AK315803 AL050087
RefSeq transcript (Entrez)NM_020177
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FEM1C
Cluster EST : UnigeneHs.47367 [ NCBI ]
CGAP (NCI)Hs.47367
Alternative Splicing GalleryENSG00000145780
Gene ExpressionFEM1C [ NCBI-GEO ]   FEM1C [ EBI - ARRAY_EXPRESS ]   FEM1C [ SEEK ]   FEM1C [ MEM ]
Gene Expression Viewer (FireBrowse)FEM1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56929
GTEX Portal (Tissue expression)FEM1C
Human Protein AtlasENSG00000145780-FEM1C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JP0
Splice isoforms : SwissVarQ96JP0
PhosPhoSitePlusQ96JP0
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    TPR-like_helical_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)FEM1C
DMDM Disease mutations56929
Blocks (Seattle)FEM1C
SuperfamilyQ96JP0
Human Protein Atlas [tissue]ENSG00000145780-FEM1C [tissue]
Peptide AtlasQ96JP0
HPRD16384
IPIIPI00064238   
Protein Interaction databases
DIP (DOE-UCLA)Q96JP0
IntAct (EBI)Q96JP0
FunCoupENSG00000145780
BioGRIDFEM1C
STRING (EMBL)FEM1C
ZODIACFEM1C
Ontologies - Pathways
QuickGOQ96JP0
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  protein ubiquitination  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  protein ubiquitination  
NDEx NetworkFEM1C
Atlas of Cancer Signalling NetworkFEM1C
Wikipedia pathwaysFEM1C
Orthology - Evolution
OrthoDB56929
GeneTree (enSembl)ENSG00000145780
Phylogenetic Trees/Animal Genes : TreeFamFEM1C
HOVERGENQ96JP0
HOGENOMQ96JP0
Homologs : HomoloGeneFEM1C
Homology/Alignments : Family Browser (UCSC)FEM1C
Gene fusions - Rearrangements
Tumor Fusion PortalFEM1C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFEM1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FEM1C
dbVarFEM1C
ClinVarFEM1C
1000_GenomesFEM1C 
Exome Variant ServerFEM1C
ExAC (Exome Aggregation Consortium)ENSG00000145780
GNOMAD BrowserENSG00000145780
Genetic variants : HAPMAP56929
Genomic Variants (DGV)FEM1C [DGVbeta]
DECIPHERFEM1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFEM1C 
Mutations
ICGC Data PortalFEM1C 
TCGA Data PortalFEM1C 
Broad Tumor PortalFEM1C
OASIS PortalFEM1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFEM1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFEM1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FEM1C
DgiDB (Drug Gene Interaction Database)FEM1C
DoCM (Curated mutations)FEM1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FEM1C (select a term)
intoGenFEM1C
Cancer3DFEM1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608767   
Orphanet
DisGeNETFEM1C
MedgenFEM1C
Genetic Testing Registry FEM1C
NextProtQ96JP0 [Medical]
TSGene56929
GENETestsFEM1C
Target ValidationFEM1C
Huge Navigator FEM1C [HugePedia]
snp3D : Map Gene to Disease56929
BioCentury BCIQFEM1C
ClinGenFEM1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56929
Chemical/Pharm GKB GenePA134891999
Clinical trialFEM1C
Miscellaneous
canSAR (ICR)FEM1C (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFEM1C
EVEXFEM1C
GoPubMedFEM1C
iHOPFEM1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:42 CET 2017

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